Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00756 ATGGCGAAAGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTCAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTGGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCCAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAATTACAGCTGGTAGAAAACAGCAATTACACCCGATTAAACAAGGAAATTGCTGAAAAAACTCATCAACTAAGGCAGATGAGGGGTGAGGAACTTCAAACATTGAATATAGAGGAATTGCAGCAGTTGGAGAAGTCACTGGAGTCTGGATTGAGCCGTGTGATGGAGAAAAAGGGTGAACAGATCATGAAAGAGATCACTGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGATTGAAACAACAAGCGGAGAAAATGAATGGCGTAAGGCACCTGGGCGTAGAGCCCGAGATTTTGGTCGTGGAGGATGGCCAGTCGTCGAACTCCGTCACTGAAGTTTGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAGAGCTCAGACACATCTCTTAAATTAGGGTACCGTCGTTGCATAAAAATTGATTTAAAATTATGTTCTACTGATGTTCATTTAGACTGGCGAAGTTTAGTATGA 744 44.89 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNIEELQQLEKSLESGLSRVMEKKGEQIMKEITDLQRKSAELMDENKRLKQQAEKMNGVRHLGVEPEILVVEDGQSSNSVTEVCVSNSNGPPQDLESSDTSLKLGYRRCIKIDLKLCSTDVHLDWRSLV* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4686578 4690625 + Chy2G030230.1 Chy02g00756 220204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00756 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy02g00756 247 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 225 - -
Chy02g00756 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy02g00756 247 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy02g00756 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 225 - -
Chy02g00756 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy02g00756 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy02g00756 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy02g00756 247 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Chy02g00756 247 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy02g00756 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy02g00756 247 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Chy02g00756 247 Coils Coil 94 114 - -
Chy02g00756 247 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Chy02g00756 247 Coils Coil 143 177 - -
Chy02g00756 247 Coils Coil 121 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00215 Chy-Chr1:1451095 Chy02g00756 Chy-Chr2:4686578 2.43E-71 dispersed
Chy02g00756 Chy-Chr2:4686578 Chy07g01771 Chy-Chr7:21296543 9.79E-59 dispersed
Chy07g01745 Chy-Chr7:21110065 Chy02g00756 Chy-Chr2:4686578 2.59E-19 transposed
Chy02g00756 Chy-Chr2:4686578 Chy03g01305 Chy-Chr3:16057776 7.82E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17476 PF01486 K-box 2.40E-16 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00756 - - csv:101203152 421.779