Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00769 ATGGAGTTGTTGCATGCAAATGCATGTTTAATTGGTACTAACTGTAAGATGGGAACTCAAGGTCAAATAGGATTAGTAGCACAAAAGAATATGCACCCTCCTCAGCCCGGAAGATTTGAAGATCGTGAAGATCTTATTAAATATGTTCGTGATTTTGGTGCTGATCAGGGATATGTTGTAACGATTAAGAAGTCTAGGAAAGATAGAAGAGTCATCCTTGGTTGTGATAGAGGAGGTGTGTACCGCAACAGGCGTAAGATTGCTGAGAGTCCACGGAAAAGGAAAGCTAGCTCACGCCTGATAAATTGCCCATTTGAAGCAATTGGCAAGAAGGAAGATGATGCCTGGATGCTTACCATTAAAAATGGAAGCCATAACCATGAGCCCTTAAAAGATAGGTCAGAGCATCCTTACAGTCGCCGTTTTACAGAGGATGAAGTAAAGCAAATAAAATTAATGACTGAAGCTGGTATAAAACCACGTCAAGTGCTTAAAGCTCTCAAACAACACAATCCAGATCTGCAGTCAACACCAAGACATTTGTATAACCTCAAAGCCAAAATTCGCCAAGGAAATCTATCAGATAAGAATTTCAAGTCTTGGAGGCCTAATATTTCCGTTCCTACAAATAGTAGTCATACCGTCACTGGGGATTCAATCAAGCAAAATCATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGCACAACTGTCAAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCATGTCCCTTTAACAACCTACGAAGAGTTTAAGGCTGCTGTCAATGCAGCCAAACAAGCTTTTCCCTCATGGAGAAACACACCAATTTATACTCGTCAGTGTGTTATGTTCAAGTTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTAATGAATACTGTTGCAGAACAGGGAAAAACATTAAAGGATGCTCAAGATGATATCATCTGTGGTTTAGAGGTGGTGAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAGTTCATCCCTAGTGCATCTGATGGAATTGATTCGTACTGCATCCGAGAACCAATAGGTGTGTGTGCTGGGATATGCTCTTTAAACCATCCAGCAACAGTTTCCTTATGGATGTTCCCAATTGCAGTTACATGTGGCAATACATTTGTTCTTAAACCATGTGAAACGCACCCGGGGGCTTCAATGTTGCTAGCTGCATTAGCGATGGAGTCTGGCTTGCCTGATGGTGTTCTGAATATTGTTCATGGATCCCATGATATCATCAACTATATATGTGACGACGAGGACATAAAAGCTGTATCCTTTTCCAGTTCAAGTTCAGTTGGAAAACACATATATGCTAGGGCTGCTGCTACAGCAAAGAAAATTCAGACTCACTTTGGAGGCAAGAGTCATACAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAGTGCTCTGGTTGATGCTGGATTGGGTACTGTTGGACGGACTTGTATGGCTATTGACATCATTGTCTCCGTTGGGAGTTCAACCCTGTGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAGGTGAATGTGGGAACAGATCCCAATGCTGACCTTGGTCCTGTAACTACAAAAGAGGTGAAAAATCATTTTTGTAAATTAGTTCAAAGTGGCATTGAAGATGGTGCTAGACTTTTGCTAGACGGTAGAGATATCGTGGTCTCAGGATATGAAAATGGAAATTTTATCGGCCCAACCATTTTATCAGGTGTAACAACTGACATGGCGTGCTACAAGGAAGAATTTTTTGGACCAGTTCTCCTTTTTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTGTAAACCGAAACAAAAACCGAAATGGAGCTTCCATATTCACAACTTCTGGCATTTATGCGAGGAAGTTTCAGAGTGAAGTGGAAGTGGGAACGGTTGGTATCAATGTTGCTGTTACAGTTCCGTTGCCATCTTCCTTCAATGGTTTGAAGCCAACTTCTGCTGTTGATCAAGTAGGGCTGGAGTTTTACACCCAATTGAAGAGAGTGGCTCAACAGTGGAAGAACTCACTAAGTATTGGCGTCTCAATGGCGGTGCCTTCACCATCTGAGAGACGTTTGAGATCTCGTGCTGCACCTTCCATGTTGGTTTCAACATCTGAGAAAGATTCACCTGGTATGAAGCACAGGAGTTTACCCCCGTTGCCTTCCACATCTGAAAGGCATTCACCCAGCGTCGCTGTACTTCTGCCGAACCCTCGAATAACTCCCACAAGCTTAACTAATGAAAGATCCACCTCCTCTCCGCCGACTCCTGATAGGAATTTGCACGGACTCTCCCTGATTTCTACCTTATCATCGGAGGGGGATGTATCCAACCAAGATTTGTCTCCTGCAATGCTTTCAGCGCGTGATAGAGATTTACCTGGTCAAGCTATGTCAATGGCAACATCCAGATCATCTGATAGACTGTACATACCTCAGAAATCTCATTGGAATGAAACCCCGAGGGCTGATTCAATTCCATCCAGTTCTGAGAGGATCCATGCGCCTTTTTCGCAGACAAGCAGCATCAAAGGACAGGCATGTCGAACAACTCATCCTGCTTTGGTCTTAGCCGCAGAGGGGGGGTTATATGTGCCAACATCTCATGACGCTATTTGTCTAATTAACCATGGAAATGATAACACCAGTCCGTCTCGAAGAATCAACAGCATGTGTCAATCATCAGAACGGGTATACATGCTAACAACTTCTCATCTGAACGACAGTATGGGTCAAACATTGGAGAGAACTGATACCTCCTTGTTTCCTTCTTCAGAGAGGCATTATGCGCCTCCTTCTGATGGAAATGACCACATCAGCTTAGCCTCTCATACAGATGTCACTTTGCAATCAACCTCAGATAGAATGTTTTTGTCTAGTTTGTCTGAAAGGGACGATAATATGGCTTCCACTGCTTCCCAACAAGAGAGAATGTATAGACCTCCATTAGTTCATAGAAATGGAGGTATGGCACCGAAATCGGAATGGTTATGCATTCCCACGCCTGCTGGAACTCAGAGAATTTACACACAAGGTCCAATGGTTTCAGCAGATGAATTTCAATGCCAAGGAGCATCATTGACATTGCCTGCATCGCAAAGAATAGGATTGAATTTTTGA 3198 43.03 MELLHANACLIGTNCKMGTQGQIGLVAQKNMHPPQPGRFEDREDLIKYVRDFGADQGYVVTIKKSRKDRRVILGCDRGGVYRNRRKIAESPRKRKASSRLINCPFEAIGKKEDDAWMLTIKNGSHNHEPLKDRSEHPYSRRFTEDEVKQIKLMTEAGIKPRQVLKALKQHNPDLQSTPRHLYNLKAKIRQGNLSDKNFKSWRPNISVPTNSSHTVTGDSIKQNHQLKVPNLIGGEFLDSHNCQVVDVINPATQEVVSHVPLTTYEEFKAAVNAAKQAFPSWRNTPIYTRQCVMFKFQELILRDMDKLVMNTVAEQGKTLKDAQDDIICGLEVVKHACGLATMQMGEFIPSASDGIDSYCIREPIGVCAGICSLNHPATVSLWMFPIAVTCGNTFVLKPCETHPGASMLLAALAMESGLPDGVLNIVHGSHDIINYICDDEDIKAVSFSSSSSVGKHIYARAAATAKKIQTHFGGKSHTIIMPDANMEATLSALVDAGLGTVGRTCMAIDIIVSVGSSTLWEEKLVECAKALKVNVGTDPNADLGPVTTKEVKNHFCKLVQSGIEDGARLLLDGRDIVVSGYENGNFIGPTILSGVTTDMACYKEEFFGPVLLFMQADNLEEAISIVNRNKNRNGASIFTTSGIYARKFQSEVEVGTVGINVAVTVPLPSSFNGLKPTSAVDQVGLEFYTQLKRVAQQWKNSLSIGVSMAVPSPSERRLRSRAAPSMLVSTSEKDSPGMKHRSLPPLPSTSERHSPSVAVLLPNPRITPTSLTNERSTSSPPTPDRNLHGLSLISTLSSEGDVSNQDLSPAMLSARDRDLPGQAMSMATSRSSDRLYIPQKSHWNETPRADSIPSSSERIHAPFSQTSSIKGQACRTTHPALVLAAEGGLYVPTSHDAICLINHGNDNTSPSRRINSMCQSSERVYMLTTSHLNDSMGQTLERTDTSLFPSSERHYAPPSDGNDHISLASHTDVTLQSTSDRMFLSSLSERDDNMASTASQQERMYRPPLVHRNGGMAPKSEWLCIPTPAGTQRIYTQGPMVSADEFQCQGASLTLPASQRIGLNF* 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4759868 4774819 - Chy2G030360.1 Chy02g00769 220217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00769 1065 MobiDBLite consensus disorder prediction 713 789 - -
Chy02g00769 1065 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 230 698 IPR010061 GO:0004491
Chy02g00769 1065 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 473 672 IPR016163 GO:0016620
Chy02g00769 1065 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE [ACYLATING], MITOCHONDRIAL-LIKE 17 1061 - -
Chy02g00769 1065 MobiDBLite consensus disorder prediction 763 789 - -
Chy02g00769 1065 Pfam Aldehyde dehydrogenase family 238 694 IPR015590 GO:0016491
Chy02g00769 1065 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 232 675 IPR016162 GO:0016491
Chy02g00769 1065 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 17 1061 IPR010061 GO:0004491
Chy02g00769 1065 CDD ALDH_F6_MMSDH 228 698 IPR010061 GO:0004491
Chy02g00769 1065 SUPERFAMILY ALDH-like 221 700 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00769 K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27] - csv:101207178 1988.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00197 Chy-Chr1:1325445 Chy02g00769 Chy-Chr2:4759868 0 dispersed
Chy02g00769 Chy-Chr2:4759868 Chy11g01046 Chy-Chr11:14923094 5.94E-52 dispersed
Chy02g00766 Chy-Chr2:4742641 Chy02g00769 Chy-Chr2:4759868 7.54E-70 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01912 . 11 508 Aldehyde Dehydrogenase Gene Family AT3G24503 71.4 1.7e-211 732.3
Chy02g02570 . 64 549 Aldehyde Dehydrogenase Gene Family AT3G24503 54.6 6.5e-155 544.3
Chy02g02570 . 4 549 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 2.7e-255 877.9
Chy02g01912 . 23 508 Aldehyde Dehydrogenase Gene Family AT3G48000 55.6 3.8e-161 565.1
Chy02g02570 . 4 392 Aldehyde Dehydrogenase Gene Family AT1G23800 74.1 4.6e-167 584.3
Chy02g01912 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.4 6.8e-102 367.9
Chy07g00628 . 13 490 Aldehyde Dehydrogenase Gene Family AT4G34240 63.6 2.8e-180 628.6
Chy07g00627 . 3 494 Aldehyde Dehydrogenase Gene Family AT4G34240 61.6 6.7e-174 607.4
Chy07g00628 . 78 488 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 1.1e-179 626.3
Chy07g00627 . 72 492 Aldehyde Dehydrogenase Gene Family AT1G44170 68.6 3.2e-171 598.2
Chy05g00127 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.9 1.4e-118 423.3
Chy07g01274 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 3.6e-114 408.7
Chy07g01274 . 1 478 Aldehyde Dehydrogenase Gene Family AT4G36250 63.0 1.4e-183 639.4
Chy05g00127 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.6 1.4e-159 559.7
Chy11g01046 . 37 529 Aldehyde Dehydrogenase Gene Family AT1G79440 77.1 7.9e-228 786.6
Chy01g00197 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 81.7 5.2e-236 813.9
Chy02g00769 . 193 699 Aldehyde Dehydrogenase Gene Family AT2G14170 60.7 1.4e-177 619.8
Chy02g02550 . 71 571 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 2.4e-250 861.3
Chy02g02550 . 71 574 Aldehyde Dehydrogenase Gene Family AT3G48170 80.4 3.4e-252 867.5
Chy05g01239 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.9 2.6e-268 921.0
Chy12g01328 . 21 556 Aldehyde Dehydrogenase Gene Family AT5G62530 77.8 5.4e-259 890.2
Chy11g01565 . 1 600 Aldehyde Dehydrogenase Gene Family AT3G66658 74.3 1.9e-270 928.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010728 0 5 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 2 1 1 1 3 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00769 Chy_Chr02 FPKM 9.030697 10.116436 10.870809 9.859169 6.307392 6.826148 6.705473 18.69039 16.998814 17.736301