Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00773 ATGTTGTCACGCGACGTAACGTTAGAACTGCAGAATCATGGTCAGGTAATAATTGACAATGGCATAGTTCGAGTCACTTTATCTCGTCCTGATGGCAATGTTATTGCTTTAAAATACAAGGGTATTGACAACCTCCTTGAAATTCACAACGTCCAATCTAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAAAGCAAGTGCCACTGACAGGGTAAGAGCGACAAATTTCAAAGTAATTACCGGCAACAGTGACCAAGTGGAGCTTTCATTCACCAAAACATGGGATCCTTCCGACCCTTCTTCGCTCCCTTTGAACATAGACAAAAGGTATATTCTGCGACGTGGGGATTCCGGGTTCTATTCATATGGTATATTTGAACGCCTCAATGGATGGCCTCAAATTGAGGTTGATCAAATTAGAATTGCCTACAAACTCCTAGGGGACAAATTTCATTACATGGCGATATCGGACAATAGACAGAGAATGATGCCAACTGCAGAGGACCGTCTTACTGGGAAGCCTTTGGATTATCCGGAGGCGGTTCTATTAACCCGACCCAGCGATCCTAGCTTTCGAGGAGAGGTGGACGATAAGTACCAATACTCATTAGAAAATATGGAGAACAAGGTTCATGGATGGGAGTCAAGTGATCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTCCGTACGGCTGGTCCGGTCAAGCAAGATCTCACTTCCCACGTCGGCCCCGTAACTCTTTCTATGTTTGTGAGTACACATTATGCGGGTAAAGACGTTTCCATGAGATTTCAAGAGGGAGAAGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATGTTAACTCCGACCCAACCGGAACTGATAAACCCGGTTCACTCTGGGACGATGCTAAAATCCAGATGAGGATTGAAACAAGTAAATGGCCATACAACTTTGTTGAGTCCACAGAATTTCAGTCGTCAGAACAAAGAGGAAGCTTGAGTGGTCAATTATTAGTCCGAGATGGATACGCTAAGTACCCACAGATGTGGGGCGATTCCGCTTATGTAGGCCTTGCTGCTCCTGGGGAACTAGGGTCTTGGCAAAGAGAAAGCAAGGGATACCAATTTTGGACACGAGCGGACGAACATGGATACTTCTCAATTGATAACATTAGATCGGGAACTTACAATTTATATGCTTGGGTACCTGGTGTCATTGGCGATTACAAGTATGACAACCAAATCACCATCACACCTAGAAGTTCCACTAATCTAAATTTGTTGGTCTTTCACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATTGGCATCCCAGATCGGAAGGCAGCTGAGTTCTATATACCAAGTACTCGACCTACCCTCACGAATTGCTTTTACAATGATTCCAAGCTCCACATCAATGATGATAATTTTCGACAATACGGTCTTTGGGAACGATACGCTGAATTGTATCCACATGGAGATCTTGTCTACAATGTCGACACCGATGACTACCGTCGTAACTGGTTCTACGCTCATGTCACCCGAGCTACTAGTTCTGGTACCTACGAGGCAACAACGTGGCAAATTGTGTTTCGTATTCCAAGGCCTAAACAGATTGGTAGCTATATGCTTCGATTAGCCTTGGCCTCCTCAACTGATGCCGTGATCGATATCCGATTCAACAACCCTTCTACCAAACGAACTCATTTCACAACCGGGTATTGGTCATCAGGAAAAGATAACGCCATTGCCAGACATGGTATTCATGGGCTTTATTGGTTATTCAACTTCCAGGTTCCAAGCCAACTTTTGATAGAAGGTGAAAACGTGATCTATCTAACACAAAGAAGACATACAGGAGAATTTCAAGGAGTAATGTACGACTACATACGGTTCGAAGATGTGGAGTAA 1917 44.55 MLSRDVTLELQNHGQVIIDNGIVRVTLSRPDGNVIALKYKGIDNLLEIHNVQSNRGYWDVVWNRPNKASATDRVRATNFKVITGNSDQVELSFTKTWDPSDPSSLPLNIDKRYILRRGDSGFYSYGIFERLNGWPQIEVDQIRIAYKLLGDKFHYMAISDNRQRMMPTAEDRLTGKPLDYPEAVLLTRPSDPSFRGEVDDKYQYSLENMENKVHGWESSDPHVGFWMITPSDEFRTAGPVKQDLTSHVGPVTLSMFVSTHYAGKDVSMRFQEGEAWKKVFGPVFTYVNSDPTGTDKPGSLWDDAKIQMRIETSKWPYNFVESTEFQSSEQRGSLSGQLLVRDGYAKYPQMWGDSAYVGLAAPGELGSWQRESKGYQFWTRADEHGYFSIDNIRSGTYNLYAWVPGVIGDYKYDNQITITPRSSTNLNLLVFHPPRQGPTLWEIGIPDRKAAEFYIPSTRPTLTNCFYNDSKLHINDDNFRQYGLWERYAELYPHGDLVYNVDTDDYRRNWFYAHVTRATSSGTYEATTWQIVFRIPRPKQIGSYMLRLALASSTDAVIDIRFNNPSTKRTHFTTGYWSSGKDNAIARHGIHGLYWLFNFQVPSQLLIEGENVIYLTQRRHTGEFQGVMYDYIRFEDVE* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4789319 4792687 - Chy2G030400.1 Chy02g00773 220221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00773 638 Pfam Polysaccharide lyase family 4, domain III 439 633 IPR029411 -
Chy02g00773 638 Gene3D - 437 635 - -
Chy02g00773 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 636 - -
Chy02g00773 638 Gene3D - 9 289 IPR014718 GO:0030246
Chy02g00773 638 Gene3D - 327 429 - -
Chy02g00773 638 SUPERFAMILY Starch-binding domain-like 373 430 IPR013784 GO:0030246
Chy02g00773 638 Pfam Rhamnogalacturonate lyase family 4 198 IPR010325 -
Chy02g00773 638 CDD RGL4_C 441 635 - -
Chy02g00773 638 SUPERFAMILY Galactose-binding domain-like 437 635 IPR008979 -
Chy02g00773 638 SUPERFAMILY Galactose mutarotase-like 13 292 IPR011013 GO:0003824|GO:0005975|GO:0030246
Chy02g00773 638 CDD RGL4_M 330 427 IPR029413 -
Chy02g00773 638 Pfam Polysaccharide lyase family 4, domain II 353 426 IPR029413 -
Chy02g00773 638 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 636 - -
Chy02g00773 638 CDD RGL4_N 15 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00773 Chy-Chr2:4789319 Chy04g00198 Chy-Chr4:1758057 0 dispersed
Chy06g01589 Chy-Chr6:18090060 Chy02g00773 Chy-Chr2:4789319 0 transposed
Chy02g00773 Chy-Chr2:4789319 Chy03g01323 Chy-Chr3:16226937 0 wgd
Chy02g00773 Chy-Chr2:4789319 Chy04g00196 Chy-Chr4:1740653 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00773 K18195 - csv:101206696 1272.69