Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00774 | ATGGGTAGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTAACTTTCTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGTTCCAGCATGCATTCCATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAGTTATGGCAGAAGGAGGTAACAACATTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAACTCTACGGTTTATCAATCAAAGATCTAAACAATCTTGAGAATCAATTGGAGTTCAGCTTACAAAGCATTCGAATTAAAAAGGACCAAATATTAAATGATGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATAATCGCTGCGGCTCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA | 699 | 38.34 | MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLENQLEFSLQSIRIKKDQILNDEIKELNRKGILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQLSPPEQQA* | 233 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4800070 | 4803727 | + | Chy2G030410.1 | Chy02g00774 | 220222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00774 | 232 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Chy02g00774 | 232 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | Coils | Coil | 123 | 143 | - | - | |
Chy02g00774 | 232 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | Coils | Coil | 86 | 113 | - | - | |
Chy02g00774 | 232 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 | 1 | 231 | - | - | |
Chy02g00774 | 232 | Gene3D | - | 13 | 85 | IPR036879 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 231 | - | - | |
Chy02g00774 | 232 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977|GO:0045944 | |
Chy02g00774 | 232 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | SUPERFAMILY | SRF-like | 2 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Chy02g00774 | 232 | Pfam | K-box region | 85 | 170 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00774 | Chy-Chr2:4800070 | Chy09g00018 | Chy-Chr9:204900 | 1.03E-41 | dispersed | |
Chy07g01765 | Chy-Chr7:21246910 | Chy02g00774 | Chy-Chr2:4800070 | 1.29E-29 | transposed | |
Chy08g01097 | Chy-Chr8:18112967 | Chy02g00774 | Chy-Chr2:4800070 | 5.97E-11 | transposed | |
Chy02g00774 | Chy-Chr2:4800070 | Chy03g01305 | Chy-Chr3:16057776 | 1.30E-37 | wgd | |
Chy02g00774 | Chy-Chr2:4800070 | Chy04g00194 | Chy-Chr4:1706043 | 2.65E-22 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17478 | PF01486 | K-box | 2.70E-24 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00774 | K09264 | - | csv:101206453 | 434.491 |