Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00774 ATGGGTAGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTAACTTTCTCAAAGAGAAGAAAGGGACTTATTAAAAAGGCCAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCTAGTTCTGGCAAACACTACGAATTTGCAAGTTCCAGCATGCATTCCATAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAATTACTGTTGAATCCAATTTCAGATGTGAAGTTATGGCAGAAGGAGGTAACAACATTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAACTCTACGGTTTATCAATCAAAGATCTAAACAATCTTGAGAATCAATTGGAGTTCAGCTTACAAAGCATTCGAATTAAAAAGGACCAAATATTAAATGATGAAATAAAAGAATTGAACAGAAAGGGAATTCTGATGCACCAAGAAAATATAGAGTTGAGCAACAAAGTAAGCCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTATGGACATGATTCAAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTAATTCCATATGGTATAATCGCTGCGGCTCCTATTGCCGGCGACGCTCTGTGTGTGCCAATCCACCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 699 38.34 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASSSMHSIIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLENQLEFSLQSIRIKKDQILNDEIKELNRKGILMHQENIELSNKVSLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIIAAAPIAGDALCVPIHLQLSPPEQQA* 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4800070 4803727 + Chy2G030410.1 Chy02g00774 220222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00774 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy02g00774 232 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy02g00774 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy02g00774 232 Coils Coil 123 143 - -
Chy02g00774 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy02g00774 232 Coils Coil 86 113 - -
Chy02g00774 232 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 231 - -
Chy02g00774 232 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Chy02g00774 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Chy02g00774 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Chy02g00774 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy02g00774 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy02g00774 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy02g00774 232 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Chy02g00774 232 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00774 Chy-Chr2:4800070 Chy09g00018 Chy-Chr9:204900 1.03E-41 dispersed
Chy07g01765 Chy-Chr7:21246910 Chy02g00774 Chy-Chr2:4800070 1.29E-29 transposed
Chy08g01097 Chy-Chr8:18112967 Chy02g00774 Chy-Chr2:4800070 5.97E-11 transposed
Chy02g00774 Chy-Chr2:4800070 Chy03g01305 Chy-Chr3:16057776 1.30E-37 wgd
Chy02g00774 Chy-Chr2:4800070 Chy04g00194 Chy-Chr4:1706043 2.65E-22 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17478 PF01486 K-box 2.70E-24 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00774 K09264 - csv:101206453 434.491