Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00781 ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCAACACCTTGGACTTCTTCATACTCAAATGGGTTCAATGATTTTTTTCAAAATGGCTGGAATTTCGCTTCTTTTGATGAAAATCCCCAAATGGGTTCTTCCACTTTCTCCAATTTTCCCACTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAACTCTACAGCAATTTTCTCGAAGGGTTTGCGATGCCGGAGCTCGATTCCTCATCCTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATGAGTAATAAGAACAATGGTTACCCTCCGGTAGCGATGGAGGAGGAAGAACTTGGTTTTATCGAGAGTGAAACAGCTCCAAGTGTTTGTAAAGTGGAAATGGAGCAAATGGGTGTTCGTGAAATTAATGTTTCTATAATGGGTGTCGCAGAATTGGGAAAAAGAAGCAGCAACAAAGCTAAGAAGATTGAAGGACAGCCTTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAACTGGTTTAGATTCAAATCACGTGGGTTTCCTCAATGGGATCTCTAAGGAAGGGAAGTCCAATGAGGTTCAAGTGAGAAATTCTCCAAAGTTCGATGTTGAAAGGAAGGAGAAGGAGACTCGAATCGACATTTGCTGTGCAACAAGGCCAGGATTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGTCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTGCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAAGCACTGTTCAGAAATGCAGGATATGGAGGAAAGTGCTTGTAG 1026 41.03 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFASFDENPQMGSSTFSNFPTIQTANDFSFADQQLYSNFLEGFAMPELDSSSYTKNNETPPFVSQEEMSNKNNGYPPVAMEEEELGFIESETAPSVCKVEMEQMGVREINVSIMGVAELGKRSSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEETGLDSNHVGFLNGISKEGKSNEVQVRNSPKFDVERKEKETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCAEGSAQKAVASSDDIKEALFRNAGYGGKCL* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4839171 4840507 + Chy2G030480.1 Chy02g00781 220229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00781 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 341 - -
Chy02g00781 341 PANTHER HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED 3 341 - -
Chy02g00781 341 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Chy02g00781 341 SMART finulus 172 221 IPR011598 GO:0046983
Chy02g00781 341 CDD ACT_UUR-ACR-like 267 308 - -
Chy02g00781 341 Gene3D - 157 230 IPR036638 GO:0046983
Chy02g00781 341 Coils Coil 205 225 - -
Chy02g00781 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983
Chy02g00781 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00781 Chy-Chr2:4839171 Chy12g01144 Chy-Chr12:16365054 3.07E-39 dispersed
Chy02g00781 Chy-Chr2:4839171 Chy03g01286 Chy-Chr3:15895293 1.78E-77 wgd
Chy02g00781 Chy-Chr2:4839171 Chy04g00184 Chy-Chr4:1633605 2.73E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17479 PF00010 HLH 1.90E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00781 - - csv:101205974 665.225