Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00781 | ATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTATTAGCTTCAACACCTTGGACTTCTTCATACTCAAATGGGTTCAATGATTTTTTTCAAAATGGCTGGAATTTCGCTTCTTTTGATGAAAATCCCCAAATGGGTTCTTCCACTTTCTCCAATTTTCCCACTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAACTCTACAGCAATTTTCTCGAAGGGTTTGCGATGCCGGAGCTCGATTCCTCATCCTACACTAAGAACAACGAAACCCCACCATTTGTTTCGCAAGAAGAAATGAGTAATAAGAACAATGGTTACCCTCCGGTAGCGATGGAGGAGGAAGAACTTGGTTTTATCGAGAGTGAAACAGCTCCAAGTGTTTGTAAAGTGGAAATGGAGCAAATGGGTGTTCGTGAAATTAATGTTTCTATAATGGGTGTCGCAGAATTGGGAAAAAGAAGCAGCAACAAAGCTAAGAAGATTGAAGGACAGCCTTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGCTAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAACTGGTTTAGATTCAAATCACGTGGGTTTCCTCAATGGGATCTCTAAGGAAGGGAAGTCCAATGAGGTTCAAGTGAGAAATTCTCCAAAGTTCGATGTTGAAAGGAAGGAGAAGGAGACTCGAATCGACATTTGCTGTGCAACAAGGCCAGGATTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGTCTTGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTGCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAAGCACTGTTCAGAAATGCAGGATATGGAGGAAAGTGCTTGTAG | 1026 | 41.03 | MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFASFDENPQMGSSTFSNFPTIQTANDFSFADQQLYSNFLEGFAMPELDSSSYTKNNETPPFVSQEEMSNKNNGYPPVAMEEEELGFIESETAPSVCKVEMEQMGVREINVSIMGVAELGKRSSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEETGLDSNHVGFLNGISKEGKSNEVQVRNSPKFDVERKEKETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCAEGSAQKAVASSDDIKEALFRNAGYGGKCL* | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 4839171 | 4840507 | + | Chy2G030480.1 | Chy02g00781 | 220229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00781 | 341 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 3 | 341 | - | - | |
Chy02g00781 | 341 | PANTHER | HELIX-LOOP-HELIX, PUTATIVE, EXPRESSED-RELATED | 3 | 341 | - | - | |
Chy02g00781 | 341 | Pfam | Helix-loop-helix DNA-binding domain | 172 | 215 | IPR011598 | GO:0046983 | |
Chy02g00781 | 341 | SMART | finulus | 172 | 221 | IPR011598 | GO:0046983 | |
Chy02g00781 | 341 | CDD | ACT_UUR-ACR-like | 267 | 308 | - | - | |
Chy02g00781 | 341 | Gene3D | - | 157 | 230 | IPR036638 | GO:0046983 | |
Chy02g00781 | 341 | Coils | Coil | 205 | 225 | - | - | |
Chy02g00781 | 341 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 169 | 228 | IPR036638 | GO:0046983 | |
Chy02g00781 | 341 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 166 | 215 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00781 | Chy-Chr2:4839171 | Chy12g01144 | Chy-Chr12:16365054 | 3.07E-39 | dispersed | |
Chy02g00781 | Chy-Chr2:4839171 | Chy03g01286 | Chy-Chr3:15895293 | 1.78E-77 | wgd | |
Chy02g00781 | Chy-Chr2:4839171 | Chy04g00184 | Chy-Chr4:1633605 | 2.73E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17479 | PF00010 | HLH | 1.90E-09 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00781 | - | - | csv:101205974 | 665.225 |