Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00808 ATGGGTTTTGATGATCTTTCTAATACAAGCCTTCTTCTTGGTTTGGGATTAACACTTCCCTCTAATCCTCCTCATCTAATTTCTCAAAAACCCAAGAAGCCACTCGATTTGCTCTGTTTTCCCCCTCCTGAATCCGAGCCCTCCTTAACTTTGGGCCTTTCCACCGTCGATACCTACCCTTTTGAAACCCCTGATTTGTCTCGCCAACCCTCGCCTCACAGTGCGATTTCTTCCTTCTCCGGCAGCAGGGTCAAACGTGAAAGAGATGTTTCCGGTGAAGAGATTGAAGAGGAGAAAGCTTCTTCTCGTGTCAGCGATGAAGATGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAGGAGAGCTTTAAACTTCACAGTACTCTTAACCCTAAGCAAAAGCAAGCCTTAGCCAGAGAGTTAAATCTCCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTTAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGTGAAACGCTAACGGACGAAAACAGGAGGCTACAAAAAGAGCTACAAGAACTGAAAGCCTTGAAACTAGCGCAGCCACTGTTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGTGAGCGGATCGGCGGTGGCGCCGCCACGGTTAACGGCGACGGAAACTCCAAAGGCCCATTTTCGATAGCTACCAAGCCCCGGTTTTACAAAGCCTTCACCAAGCCTTCGGCTGCTTGCTAA 795 47.67 MGFDDLSNTSLLLGLGLTLPSNPPHLISQKPKKPLDLLCFPPPESEPSLTLGLSTVDTYPFETPDLSRQPSPHSAISSFSGSRVKRERDVSGEEIEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNSKGPFSIATKPRFYKAFTKPSAAC* 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5048828 5049820 - Chy2G030750.1 Chy02g00808 220256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00808 264 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Chy02g00808 264 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Chy02g00808 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 264 - -
Chy02g00808 264 SMART HOX_1 113 175 IPR001356 GO:0003677
Chy02g00808 264 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Chy02g00808 264 PANTHER - 1 264 - -
Chy02g00808 264 MobiDBLite consensus disorder prediction 61 118 - -
Chy02g00808 264 MobiDBLite consensus disorder prediction 61 81 - -
Chy02g00808 264 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Chy02g00808 264 Gene3D - 108 176 - -
Chy02g00808 264 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Chy02g00808 264 MobiDBLite consensus disorder prediction 82 118 - -
Chy02g00808 264 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Chy02g00808 264 Coils Coil 177 207 - -
Chy02g00808 264 CDD homeodomain 115 172 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01900 Chy-Chr1:24280237 Chy02g00808 Chy-Chr2:5048828 4.41E-74 dispersed
Chy02g00808 Chy-Chr2:5048828 Chy06g00051 Chy-Chr6:369239 1.80E-58 dispersed
Chy04g01312 Chy-Chr4:19636570 Chy02g00808 Chy-Chr2:5048828 3.88E-13 dispersed
Chy02g02272 Chy-Chr2:26791931 Chy02g00808 Chy-Chr2:5048828 4.16E-59 transposed
Chy06g01579 Chy-Chr6:17890031 Chy02g00808 Chy-Chr2:5048828 1.89E-95 transposed
Chy06g02069 Chy-Chr6:24887754 Chy02g00808 Chy-Chr2:5048828 5.93E-18 transposed
Chy09g00874 Chy-Chr9:11486462 Chy02g00808 Chy-Chr2:5048828 4.26E-49 transposed
Chy02g00808 Chy-Chr2:5048828 Chy07g00219 Chy-Chr7:1789671 2.27E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17484 PF00046 Homeodomain 4.90E-16 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00808 K09338 - csv:101218782 488.034