Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00834 ATGGGTGCCCCTAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCAGGGAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCATAAAACATCATGATAATCCTGTGCCTGTAAGCACTGTGCTTCCAAATGAGGAGATCGTTGACGCTAAGCCACTTGCGATTTCAAATGGAACAAGTCGTTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGAGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGCCCCCGTCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCACATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATGCACCATTGTTACTCCTTGAGGATAAGCAGACGGATTCTTCAAAAACCGAGAAAAATGAAGTCAAAATTATCACTAAATGCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCGGAGGCTGAAGCTGAAACAGCACAAGTGTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGTTCGTGATTCTGAAGAGAAATACTATTGCCATATTTTTGTTCTACCTGCATCCGGCCATGCATTACAAGACTAA 981 43.22 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKHHDNPVPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWPPSNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKNEVKIITKCQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQVRDSEEKYYCHIFVLPASGHALQD* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5296243 5302806 + Chy2G031010.1 Chy02g00834 220282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00834 326 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Chy02g00834 326 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Chy02g00834 326 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Chy02g00834 326 CDD SANT_TRF 6 57 - -
Chy02g00834 326 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Chy02g00834 326 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Chy02g00834 326 Gene3D - 118 191 IPR036388 -
Chy02g00834 326 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy02g00834 326 SMART sant 4 59 IPR001005 -
Chy02g00834 326 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy02g00834 326 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy02g00834 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Chy02g00834 326 Gene3D - 2 59 - -
Chy02g00834 326 Coils Coil 240 277 - -
Chy02g00834 326 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00834 Chy-Chr2:5296243 Chy07g01729 Chy-Chr7:20991115 1.21E-77 dispersed
Chy02g00834 Chy-Chr2:5296243 Chy04g00666 Chy-Chr4:7687592 4.43E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17490 PF00538 Linker_histone 2.90E-11 CL0123 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00834 K09422 - csv:101202913 498.434