Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00834 ATGGGTGCCCCTAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAGGCAGGAGTGATCAAGCATGGAGCAGGGAAATGGCGCACAATACTCACAGATCCTGAATTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCATAAAACATCATGATAATCCTGTGCCTGTAAGCACTGTGCTTCCAAATGAGGAGATCGTTGACGCTAAGCCACTTGCGATTTCAAATGGAACAAGTCGTTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACCTAAAGGAGCCAAGGGGTTCTGACCGAGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGCCCCCGTCAAACCTTAAAAAACTTCTTTCAACAAAATTAAAGCACATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCACCAAATTCTCCCTTACCTGGAAGAAGAAATGCACCATTGTTACTCCTTGAGGATAAGCAGACGGATTCTTCAAAAACCGAGAAAAATGAAGTCAAAATTATCACTAAATGCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAACAAGCGGAGGCTGAAGCTGAAACAGCACAAGTGTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCTAATAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGTTCGTGATTCTGAAGAGAAATACTATTGCCATATTTTTGTTCTACCTGCATCCGGCCATGCATTACAAGACTAA 981 43.22 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMAIKHHDNPVPVSTVLPNEEIVDAKPLAISNGTSRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWPPSNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPLPGRRNAPLLLLEDKQTDSSKTEKNEVKIITKCQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEQAEAEAETAQVFAEAAMKALECRTFPNRSPIQKVLLQVRDSEEKYYCHIFVLPASGHALQD* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5296243 5302806 + Chy2G031010.1 Chy02g00834 220282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00834 326 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Chy02g00834 326 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Chy02g00834 326 SUPERFAMILY Winged helix DNA-binding domain 116 195 IPR036390 -
Chy02g00834 326 CDD SANT_TRF 6 57 - -
Chy02g00834 326 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Chy02g00834 326 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Chy02g00834 326 Gene3D - 118 191 IPR036388 -
Chy02g00834 326 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy02g00834 326 SMART sant 4 59 IPR001005 -
Chy02g00834 326 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy02g00834 326 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Chy02g00834 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Chy02g00834 326 Gene3D - 2 59 - -
Chy02g00834 326 Coils Coil 240 277 - -
Chy02g00834 326 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00834 K09422 MYBP; transcription factor MYB, plant - csv:101202913 498.434
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00834 Chy-Chr2:5296243 Chy07g01729 Chy-Chr7:20991115 1.21E-77 dispersed
Chy02g00834 Chy-Chr2:5296243 Chy04g00666 Chy-Chr4:7687592 4.43E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g01729 . 1 325 Single Myb Histone (SMH) Gene Family AT1G49950 57.7 4.1e-72 268.5
Chy02g00834 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.8 5.6e-61 231.5
Chy02g00834 . 1 247 Single Myb Histone (SMH) Gene Family AT5G67580 53.2 1.3e-65 246.9
Chy02g00834 . 1 247 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 3.7e-57 218.8
Chy04g00666 . 1 273 Single Myb Histone (SMH) Gene Family AT1G17520 51.7 2.1e-65 246.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17490 PF00538 Linker_histone 2.90E-11 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00834 Chy_Chr02 FPKM 6.998165 9.550372 1.453675 1.260116 1.51103 1.32267 1.160769 1.980599 1.937702 2.680883