Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00840 ATGGGGAAGAAACAGCACAGTAAAGACCGACTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAATCCAAGGGCTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTTGAGGATCCTGTATGTACTGCGGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGGAAGTATGGGAAAAATCCTGTTACTGGAGCTGCCCTGAAGGAGGAGGAACTAATTCCGCTGACTTTCCATAAGAATTCTGAAGGCGAGTTTCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTATGAGGCAGTTAAAGAATTAAATATCAAAACGAAAAACTGGAAGGAACTTCTCACCGATGAATCATTTTGTAGGGAAGATATTATAACCATTCAGAACCCTACAGCGCTCGATAGTAAGGTTCTCCTGGATTTTGATCACGTGAAAAATAGCCTGAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTTCAGGAACTTGGAACCGAAAAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAAGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCGCGCATTAAAGAGGATTCCAAAGAGAATGGAAAAGGAGAGGAGAAACCTAAGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCAAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGATAGGGCACCAGTAAATGCTAAGATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTATGATCCTGTTACAAAGAATGAACATGAATATATCAAGGTCGAGAAAAATCCGAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTGCACCAAGGGCATGTGAGAATTTCATTACACTTTGTGAAAATGGTTACTACAATGGAGTTGCTTTCCATAGAAATATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACGGGGAGAGGTGGTGAATCTATATGGGGAAAGCCCTTCAATGATGAGCTTAACTCCAAGCTGGTTCATTCTGGACGGGGCGTTGTCAGTATGGCAAATAGTGGTCCCCATACTAATGGTTCCCAGTTTTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACTGTATTTGGCAGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCCGTCGATGACAACGATCGGCCTCTGGAAGAGATCAAGATAACAAACGTCACTGTCTTTGTGAATCCATATTCAGAACCTGATGAAGAGGAAGAAAAGCAGAAAGACGAAAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGGTCATGGTATAGTAACCCTGGCACTGGTGTAGCTGAAGACGGAGCTGCTGGTGGCGGTGTAGGGAAATATTTGAAAGCAAGGAATGCCCAACCCAAACCCCCTGCTGTTGATGCTAGCCTAAAACAAAATACCTTAACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA 1779 43.0 MGKKQHSKDRLFITKTEWATEWGGAKSKGSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGAALKEEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDESFCREDIITIQNPTALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENGKGEEKPKQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCENGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFNDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGSVVGGLTALAAMEKVPVDDNDRPLEEIKITNVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQPKPPAVDASLKQNTLTKKRTAAGEFKDFSSW* 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5339778 5342985 + Chy2G031070.1 Chy02g00840 220288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00840 592 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Chy02g00840 592 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Chy02g00840 592 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 590 IPR044666 -
Chy02g00840 592 MobiDBLite consensus disorder prediction 508 530 - -
Chy02g00840 592 SUPERFAMILY RING/U-box 37 104 - -
Chy02g00840 592 Coils Coil 508 528 - -
Chy02g00840 592 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Chy02g00840 592 CDD cyclophilin_RING 350 508 - -
Chy02g00840 592 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 SUPERFAMILY Cyclophilin-like 350 517 IPR029000 -
Chy02g00840 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Chy02g00840 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Chy02g00840 592 Gene3D - 330 515 IPR029000 -
Chy02g00840 592 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 2 590 - -
Chy02g00840 592 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Chy02g00840 592 MobiDBLite consensus disorder prediction 504 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00875 Chy-Chr1:7834492 Chy02g00840 Chy-Chr2:5339778 4.13E-33 dispersed
Chy02g00840 Chy-Chr2:5339778 Chy06g00229 Chy-Chr6:1498008 1.23E-47 dispersed
Chy02g00840 Chy-Chr2:5339778 Chy01g00696 Chy-Chr1:5088003 6.93E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00840 K10598 - csv:101204462 1105.89