Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00841 ATGGATACCTTGTTTCGGCTTGTTAATCTTCAATCTGATCAACAATCTTACAATTCCAGTAGGAGTACTAATTCAAGCAGTTCTAGATCTTCTAGACAAAACCAATACCATCATTACCATCAACAAGAAGACGAAGAATGCTACAATCTTCTCATGGATGACGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATAGTAATCCATACCATCCTCCTCACCCATCTTCTACCACTACCCCAACTCCTCCGCTCGATCAATTCTCATTCCTTTCACCTTCACCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACTGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTCAGCTCTCCCTATGGAGATACGGATCAAAAGCTAGCTGCCTATTTTCTGCAAGCCTTGTTTAGCCGTATGACTGATTCCGGCGACCGTAATTACCGCGCTTTGGCATCTGCTTCTGAGAAAACGTGCTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCTTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTAATTGAAGCTTTAGAAGGCGAATCCAAGCTACATATAATCGATATTAGCAATACATATTGTACGCAGTGGCCTACTTTGCTTGAAGCTCTAGCTACTCGCACCGACGATACGCCACACCTCCGTCTCACGACGGTGGTTACTACCAAGCCGAGCGGTGGGACCGGAGCTGCGGCTTCCCAGAAAGTAATGAAGGAAATTGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTTTACCATTCCGGTGATCTTTCGGAATTGGACATGGCGAAATTAGATATTAAAGAAGACGAGGCACTTGCGATTAACTGCGTCGGAGCTTTACGTTCCGTGGCGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTTCGTAGTTTACGACCGCGGATCATCACGGTGATTGAAGAGGAAGCGGATCTCGACGTTGGCGTTGATGGAATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCTCAAGGACGAGTAATGAGCGGTTGATGCTGGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGTTCGGCGGCGGAATCAGTTGAGAGGCGCGAAACAGCGTCGCGGTGGGCTCAGCGGCTGCATGGAAATGGATTTGGTCCAGTGACGTTCAGCGACGAAGTGTGCGACGACGTTAGGGCGTTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1473 47.66 MDTLFRLVNLQSDQQSYNSSRSTNSSSSRSSRQNQYHHYHQQEDEECYNLLMDDEDFSSSSNSRQYYNSNPYHPPHPSSTTTPTPPLDQFSFLSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGAAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDMAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAAESVERRETASRWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5349178 5350650 + Chy2G031080.1 Chy02g00841 220289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00841 490 Pfam GRAS domain family 111 489 IPR005202 -
Chy02g00841 490 MobiDBLite consensus disorder prediction 11 35 - -
Chy02g00841 490 MobiDBLite consensus disorder prediction 57 75 - -
Chy02g00841 490 PANTHER PROTEIN SHORT-ROOT 1 489 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Chy02g00841 490 MobiDBLite consensus disorder prediction 57 89 - -
Chy02g00841 490 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 489 IPR005202 -
Chy02g00841 490 MobiDBLite consensus disorder prediction 11 43 - -
Chy02g00841 490 ProSiteProfiles GRAS family profile. 99 489 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02173 Chy-Chr1:26325763 Chy02g00841 Chy-Chr2:5349178 6.32E-42 dispersed
Chy02g00841 Chy-Chr2:5349178 Chy11g00187 Chy-Chr11:1862058 0 dispersed
Chy02g00841 Chy-Chr2:5349178 Chy01g00400 Chy-Chr1:2827306 3.74E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17491 PF03514 GRAS 4.80E-105 CL0063 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00841 - - csv:101204711 921.768