Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00852 | ATGAGTTGCAACGGTTGCCGTGTTCTTCGAAAGGGCTGCAGTGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGATACCTCCGAAGCTCAAGGCCACGCCACTGTATTCGTCGCTAAGTTCTTTGGCCGTGCCGGACTTATGTCATTCATCTCTGCTGTACCCGAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCTTGCGGACGCACCGTGAATCCCGTTAACGGTGCTGTTGGTCTTCTCTGGACTGGAAACTGGCACGTTTGTCAGGCTGCCGTCGACACTGTCTTACGAGGCGGTACGTTGCGGCCGATCAATGATTTCCTTGCTACTGGATCCCCTAATCTGGCCTCCGACGACACTTCCGAGACTGAAGTAGGATGTACCGACATGTGGAAGATACGAGATTCTTATCCTAATTCTCGATTCTCCAACTCCCGATCTAGGCTCTCACCGAAACGCAAGCGGTCCGAGGAAGCATCCACTAAGCACCAACTGAACGACCTAGATCTCCGCTTGACTCCCACTTTTCCAGCCAAATCAACCCTCCGCGCCGCTACTCCGTCCATGAATTCGGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTCGGTGATAATCACCATCATCATTATCCAGAAGAAGGAGTCGCTCAACGGAAACTTCTCAATTTGTTCGTCTAA | 702 | 51.42 | MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLATGSPNLASDDTSETEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEEASTKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHHHYPEEGVAQRKLLNLFV* | 234 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5430973 | 5431767 | + | Chy2G031190.1 | Chy02g00852 | 220300 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00852 | 233 | Pfam | Lateral organ boundaries (LOB) domain | 2 | 100 | IPR004883 | - | |
Chy02g00852 | 233 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 233 | - | - | |
Chy02g00852 | 233 | MobiDBLite | consensus disorder prediction | 156 | 170 | - | - | |
Chy02g00852 | 233 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN | 1 | 233 | - | - | |
Chy02g00852 | 233 | MobiDBLite | consensus disorder prediction | 146 | 170 | - | - | |
Chy02g00852 | 233 | ProSiteProfiles | LOB domain profile. | 1 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00852 | Chy-Chr2:5430973 | Chy02g02365 | Chy-Chr2:27514042 | 4.82E-50 | dispersed | |
Chy02g00852 | Chy-Chr2:5430973 | Chy07g00181 | Chy-Chr7:1489053 | 1.56E-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17494 | PF03195 | LOB | 3.30E-25 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00852 | - | - | csv:101206615 | 452.21 |