Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00852 ATGAGTTGCAACGGTTGCCGTGTTCTTCGAAAGGGCTGCAGTGAATCCTGTATTCTTCGCCCTTGCTTGCAGTGGATTGATACCTCCGAAGCTCAAGGCCACGCCACTGTATTCGTCGCTAAGTTCTTTGGCCGTGCCGGACTTATGTCATTCATCTCTGCTGTACCCGAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCTTGCGGACGCACCGTGAATCCCGTTAACGGTGCTGTTGGTCTTCTCTGGACTGGAAACTGGCACGTTTGTCAGGCTGCCGTCGACACTGTCTTACGAGGCGGTACGTTGCGGCCGATCAATGATTTCCTTGCTACTGGATCCCCTAATCTGGCCTCCGACGACACTTCCGAGACTGAAGTAGGATGTACCGACATGTGGAAGATACGAGATTCTTATCCTAATTCTCGATTCTCCAACTCCCGATCTAGGCTCTCACCGAAACGCAAGCGGTCCGAGGAAGCATCCACTAAGCACCAACTGAACGACCTAGATCTCCGCTTGACTCCCACTTTTCCAGCCAAATCAACCCTCCGCGCCGCTACTCCGTCCATGAATTCGGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTCGGTGATAATCACCATCATCATTATCCAGAAGAAGGAGTCGCTCAACGGAAACTTCTCAATTTGTTCGTCTAA 702 51.42 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLATGSPNLASDDTSETEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEEASTKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHHHYPEEGVAQRKLLNLFV* 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5430973 5431767 + Chy2G031190.1 Chy02g00852 220300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00852 233 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Chy02g00852 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 233 - -
Chy02g00852 233 MobiDBLite consensus disorder prediction 156 170 - -
Chy02g00852 233 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 233 - -
Chy02g00852 233 MobiDBLite consensus disorder prediction 146 170 - -
Chy02g00852 233 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00852 Chy-Chr2:5430973 Chy02g02365 Chy-Chr2:27514042 4.82E-50 dispersed
Chy02g00852 Chy-Chr2:5430973 Chy07g00181 Chy-Chr7:1489053 1.56E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17494 PF03195 LOB 3.30E-25 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00852 - - csv:101206615 452.21