Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00853 ATGAGTAATAAAAACCAAATCACTACCACGACGGGGCAGTTCCGAAATAGGCGGCCATGGCCTGGATTATTCCCTTGTTCCTCCAAAGCTTTGGGAACTTGCTTGGGTGATGCTAATTGTATGGAACAATTATTAGTCCATTGTGCCAATGCTATTGAATCCAACGACGCTACTCTGGCTCAACAAATCCTTTGGGTCCTTAACAACATTGCCCCTCCTGATGGCGATTCCAACCAACGCTTAACTTCCGCTTTCTTACGCGCTCTCATCACACGCGCCACCAACACTGGCAACTGTAAGATTCTTGCTGCAATAACCACCGCATTCTCCTCTTCCATCACTACTCATACCTTCTCTCTTATGGACCTTGCCGCCTTCGTGGACTTAACCCCTTGGCATCGCTTCGGCTTCACCGCTGCCAATGTTGCGATTCTGGACGCCATCGAGGGTTACTCAGCCGTACACGTTGTTGATTTGAGCTTGATGCATTGCATGCAAATCCCAACATTAATCGACGCCATTGCTACACGGTTTGAGGTCCCTCCATTACTGAAACTAACGACTGTAGCTGTTGTTGCCGTAAAAGAGGCGTCGCCAATGCTGGAGCTTTCGTACGACGAATTAGGTGCGAAATTGGTGAACTTCGCGAGGTCTAAAAACGTGACTATGGAATTTAGAGTGGTCCCGTCTTGTCATACAGACGGTTTCGCTCGTTTAATCGAACAAATCCGTGTACAACATTTAATTTACGGACCTGAAAATAACGAAGCACTCGTTTTAAATTGTCATATGATGCTTCATTACATCCCTGAAGAAACGTTAAACCCAAACCCATCTCCTAATTTCGACATTTCGTCGTCTTCCTCTTCAATTCGTTCCATGTTTCTCAAGGCAATCCGTAGCTTAGATCCAACGATTGTGGTTTTAGTAGACGAAGATGCGGATTTCACCTCAAGCAAGTTGGTTACACGATTGAGATCGGCGTTTAATTATCTGTGGATTCCTTACGACTCCATGGATTCGTTTCTTCCTCGAAGCAGCAAACAGAGAGAATGGTATGAAGCGGATATCTGTTGGAAGATTGAGAATGTAATCGCTCATGAAGGGGTTCAGCGAGTTCAGAGATTGGAGCCGAAGGGGCGGTGGGTTCAACGGATGGTGAACGCCAAATTCCGAGGGGTTCCGTTTGTGGAGGAGGCGGTTTCAGAGGTGAAGACGATGCTTGATGAGCATGCAGCGGGTTGGGGATTGAAGAAGGAAGAGGACCACTTGCTGCTGACGTGGAAAGGGCACGACGTCGTTTTCGCTACTGCTTGGGTACCTTGTTAA 1329 47.1 MSNKNQITTTTGQFRNRRPWPGLFPCSSKALGTCLGDANCMEQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALITRATNTGNCKILAAITTAFSSSITTHTFSLMDLAAFVDLTPWHRFGFTAANVAILDAIEGYSAVHVVDLSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKEASPMLELSYDELGAKLVNFARSKNVTMEFRVVPSCHTDGFARLIEQIRVQHLIYGPENNEALVLNCHMMLHYIPEETLNPNPSPNFDISSSSSSIRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAHEGVQRVQRLEPKGRWVQRMVNAKFRGVPFVEEAVSEVKTMLDEHAAGWGLKKEEDHLLLTWKGHDVVFATAWVPC* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5447972 5449300 + Chy2G031200.1 Chy02g00853 220301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00853 442 Pfam GRAS domain family 41 439 IPR005202 -
Chy02g00853 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 440 IPR005202 -
Chy02g00853 442 ProSiteProfiles GRAS family profile. 32 440 IPR005202 -
Chy02g00853 442 PANTHER SCARECROW-LIKE PROTEIN 32 14 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00853 Chy-Chr2:5447972 Chy11g01923 Chy-Chr11:25354236 1.00E-48 dispersed
Chy02g00853 Chy-Chr2:5447972 Chy01g00400 Chy-Chr1:2827306 4.27E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17495 PF03514 GRAS 4.90E-91 CL0063 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00853 - - csv:101213756 832.402