Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00900 ATGGACGGCGGAGGACTACCAGAAGCTACCAGAAAAAGATCAGCCCTCGACAATCAAAGGCTCTACAAAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGCCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTGGCAGGAGAAGGCCGTGGAATTACCGCCGGCGCCGGGGACATGTCGGCGGCTTCTATACGGAAGAAGGCCACGGAGGTTGGCGCAAGAGTGGATGCTCTGGAGAGTTCCTTAGGTCAACAGAGTCGGAGCCATCATTCCCACGCATCGGCATCTCCGCCAGAAACGAAAGGGTGCAGTGGGTTCTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGTACCTTCCAAAGCCAAAGCCGAAGCCAACGGTACTATATTATGGTTGCAAGGGTAG 543 54.51 MDGGGLPEATRKRSALDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGITAGAGDMSAASIRKKATEVGARVDALESSLGQQSRSHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDVPSKAKAEANGTILWLQG* 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5816503 5819015 + Chy2G031670.1 Chy02g00900 220348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00900 180 MobiDBLite consensus disorder prediction 115 134 - -
Chy02g00900 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 159 - -
Chy02g00900 180 SUPERFAMILY DNA-binding domain 21 79 IPR016177 GO:0003677
Chy02g00900 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 6 159 - -
Chy02g00900 180 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Chy02g00900 180 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Chy02g00900 180 MobiDBLite consensus disorder prediction 115 180 - -
Chy02g00900 180 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Chy02g00900 180 Pfam AP2 domain 22 70 IPR001471 GO:0003700|GO:0006355
Chy02g00900 180 Gene3D AP2/ERF domain 21 79 IPR036955 GO:0003700|GO:0006355
Chy02g00900 180 PRINTS Ethylene responsive element binding protein signature 60 80 IPR001471 GO:0003700|GO:0006355
Chy02g00900 180 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00900 Chy11g00230 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00900 Chy-Chr2:5816503 Chy07g00155 Chy-Chr7:1318631 2.60E-55 dispersed
Chy11g00230 Chy-Chr11:2160560 Chy02g00900 Chy-Chr2:5816503 4.56E-48 wgd
Chy02g00900 Chy-Chr2:5816503 Chy03g01559 Chy-Chr3:17756196 3.58E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17498 PF00847 AP2 2.50E-11 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00900 K09286 - csv:101214481 295.434