Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy02g00900 | ATGGACGGCGGAGGACTACCAGAAGCTACCAGAAAAAGATCAGCCCTCGACAATCAAAGGCTCTACAAAGGGATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAACGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGCCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTGGCAGGAGAAGGCCGTGGAATTACCGCCGGCGCCGGGGACATGTCGGCGGCTTCTATACGGAAGAAGGCCACGGAGGTTGGCGCAAGAGTGGATGCTCTGGAGAGTTCCTTAGGTCAACAGAGTCGGAGCCATCATTCCCACGCATCGGCATCTCCGCCAGAAACGAAAGGGTGCAGTGGGTTCTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGTACCTTCCAAAGCCAAAGCCGAAGCCAACGGTACTATATTATGGTTGCAAGGGTAG | 543 | 54.51 | MDGGGLPEATRKRSALDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGITAGAGDMSAASIRKKATEVGARVDALESSLGQQSRSHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDVPSKAKAEANGTILWLQG* | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 5816503 | 5819015 | + | Chy2G031670.1 | Chy02g00900 | 220348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy02g00900 | 180 | MobiDBLite | consensus disorder prediction | 115 | 134 | - | - | |
Chy02g00900 | 180 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 6 | 159 | - | - | |
Chy02g00900 | 180 | SUPERFAMILY | DNA-binding domain | 21 | 79 | IPR016177 | GO:0003677 | |
Chy02g00900 | 180 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 | 6 | 159 | - | - | |
Chy02g00900 | 180 | CDD | AP2 | 22 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Chy02g00900 | 180 | ProSiteProfiles | AP2/ERF domain profile. | 21 | 78 | IPR001471 | GO:0003700|GO:0006355 | |
Chy02g00900 | 180 | MobiDBLite | consensus disorder prediction | 115 | 180 | - | - | |
Chy02g00900 | 180 | SMART | rav1_2 | 21 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Chy02g00900 | 180 | Pfam | AP2 domain | 22 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Chy02g00900 | 180 | Gene3D | AP2/ERF domain | 21 | 79 | IPR036955 | GO:0003700|GO:0006355 | |
Chy02g00900 | 180 | PRINTS | Ethylene responsive element binding protein signature | 60 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Chy02g00900 | 180 | PRINTS | Ethylene responsive element binding protein signature | 22 | 33 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy02g00900 | Chy11g00230 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy02g00900 | Chy-Chr2:5816503 | Chy07g00155 | Chy-Chr7:1318631 | 2.60E-55 | dispersed | |
Chy11g00230 | Chy-Chr11:2160560 | Chy02g00900 | Chy-Chr2:5816503 | 4.56E-48 | wgd | |
Chy02g00900 | Chy-Chr2:5816503 | Chy03g01559 | Chy-Chr3:17756196 | 3.58E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
17498 | PF00847 | AP2 | 2.50E-11 | CL0081 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy02g00900 | K09286 | - | csv:101214481 | 295.434 |