Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00903 ATGGACCATTCTGTTCCCAACAACTGCGATCGAAATGCATGTACTTCTTCGACGTGGACTCTCCCCGCCCCAGCCCTCTCTTCCTCTTCCTCTTCACCTCCCGACGATATCTCTCTGTTTCTTCAACAGATTTTGCGGCGTTCCTCTTCCTCTGCTCCTCACTTCTCTCTTCTCTCTCCCTCTCCCTCCATCTTCTCTGAGCTCACCTGCAACATTAGAGCCTTCACCCCCCCAACCCATAACCTTCCCCCTCCATACGGACCGCCCAATGCAGTGCCGGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCCCACCATCCGGTGTACTACATGATCCCTTGCGCCCTTGTCCCACATCCATTCCACCGAACGCGTCTTCTACGTCGGTCGGAGCTAGTGATCATAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCTGCCTACAAAGCCCAATCCTCGCAGCTCTTCCAAGAGAAGCAGAGCCGCTGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAAGCTCTGCAAAATCTGATCCCCAATTCTAACAAGACTGACAAGGCCTCGATGCTAGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCAATTTCTTCTGACCAAGAAAGACCTAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGCTGAAACTCCATTTGAATTGGTCCCGCCCATCCAGGCTCACCTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAATCTAAGGAGATTTGCAGCAGAGATTTACTGCGAGATGATCACCAGGCGGTGAATGTGAATGTGAGCCAATCGGAGACAACTCCCTTAGTGTCATGCCCCTATAACATACCAGAGACTCCTGATTTACAAGGATTACAGAATGGCCTCTCAGTGGAACCGTGCATCATTGAAGGAAATCGATCTGGTGTGCTTCTGAATTACACCCCAGAGCACAGCCTCGTATTCCCTTCCCCTTTTAATGGGGCGGATGAGTAG 1230 48.37 MDHSVPNNCDRNACTSSTWTLPAPALSSSSSSPPDDISLFLQQILRRSSSSAPHFSLLSPSPSIFSELTCNIRAFTPPTHNLPPPYGPPNAVPDEISAVDSSEQFANSPPSGVLHDPLRPCPTSIPPNASSTSVGASDHNENDEFDCESEEGLEALVEELPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENRSISSDQERPNQIFLSLPDQKAASIHPFMSDIGRTNAAETPFELVPPIQAHLVPFYLSESSKSKEICSRDLLRDDHQAVNVNVSQSETTPLVSCPYNIPETPDLQGLQNGLSVEPCIIEGNRSGVLLNYTPEHSLVFPSPFNGADE* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5869466 5874818 + Chy2G031700.1 Chy02g00903 220351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00903 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Chy02g00903 409 MobiDBLite consensus disorder prediction 170 186 - -
Chy02g00903 409 CDD bHLH_AtPIF_like 174 236 - -
Chy02g00903 409 Pfam Helix-loop-helix DNA-binding domain 178 224 IPR011598 GO:0046983
Chy02g00903 409 Gene3D - 169 233 IPR036638 GO:0046983
Chy02g00903 409 PANTHER TRANSCRIPTION FACTOR SPATULA 28 346 - -
Chy02g00903 409 Coils Coil 213 233 - -
Chy02g00903 409 MobiDBLite consensus disorder prediction 121 186 - -
Chy02g00903 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 234 IPR036638 GO:0046983
Chy02g00903 409 SMART finulus 180 229 IPR011598 GO:0046983
Chy02g00903 409 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 28 346 IPR031066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00903 Chy-Chr2:5869466 Chy05g01006 Chy-Chr5:14729633 1.04E-30 dispersed
Chy03g00734 Chy-Chr3:9784440 Chy02g00903 Chy-Chr2:5869466 1.30E-09 dispersed
Chy05g01443 Chy-Chr5:18311018 Chy02g00903 Chy-Chr2:5869466 4.38E-11 dispersed
Chy02g02466 Chy-Chr2:28251000 Chy02g00903 Chy-Chr2:5869466 2.66E-19 transposed
Chy02g00903 Chy-Chr2:5869466 Chy03g01556 Chy-Chr3:17723343 8.02E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17500 PF00010 HLH 4.80E-14 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00903 - - csv:101217594 739.954