Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00959 ATGGAAGTGGTTCCTTTGTCTGATGTTCAACATGTTGATGAAGAACAACAACACCACTCTGATTCTGCAACCAAAATTTCTTTGTTCTACGATGGACAATCTTCTAACAACTGCATCGATCTTCAACCCCCGATGCCAAATGTTGAACTCAATCACTTACCGCTGAATCTTGGGGACCCTCAAATTAACACCCAATGTGATTTTCAACCCCCTCCTCAATTTTTGCCTGCTTCCACCCACTGTAGTTCGGATTCATATTCTAACTATCTCATGGATGCCCAAAAGCCATCTTGTGCTTCTCCTGACTCTGAATTTGATGATGCTAACACCGATAATTACTCTACTGAATCTTGTTTAGCATCTGAAAACTCTCGTATAGTTGTGGATACTATTGAGGATGATTTGCCTACCAATAGCAAGCCGGAGGAGTTGTCTGTTTCTGGGCCACACCCAATGTGGTTGGAAGGGGATGAATCTGTGGCGCTTTGGGTGAAGTGGAGAGGGAAGTGGCAGGCAGGAATTAGATGTGCAAGGGCTGACTGGCCATTATCTACTCTAAAAGCCAAACCAACACATGACAGGAAGAAGTACTTCGTGGTCTTTTTTCCGCACACAAGGAACTATTCCTGGGCAGATGCGTTGCTTGTTCGTTCTATTGAGGAATTTCCTCAGCCTATTGCTTACAAGAGCCACAAAGCTGGCTTAAAATTGGTTGAAGATGTAAAAGTTGCAAGGAGATTTATAATGAAAAAACTTTCTGTTGGCATGCTGAATATCATAGACCAATTTCACCTTGAGGCGCTAATAGAGAGTGCACGTGATGTAGTGACTTGGAAGGAGTTTGCCATGGAAGCTTCACGCTGTAATGGTTATTCTGATCTTGGTAGAATGCTCATAAAGCTGCAGAATATGATAGTGCAGTGCTTCATAAATTCAGATTGGCTTCATAATTCTTTGCATTCTTGGGTACATCGATGCCAAAATGCTCAAACTGCAGAAATTATTGAAATGCTCAAGGAGGAATTGGCTGATGCTATTTTGTGGGACAAAGTGAAGTCTCACGGTGATGCACCAGTGCAGCCTACTTTTAGTTCTGTGTGGAAAACCTGGAAGCATGAAGTTACAAAATGGTTTTCAATATCTCCCACCCTTCCCATTACGAAAGACAAAGAGCAGCAGACTGTTGAAGCTTTCTTAGCTACTGCTCTCCAAGTTAGCAGGAAGAGACCCAAGCTTGAAGTTCGTCGGGCAGAGGCACATGCTTCACTGGTGGAATCAAAGTGCTCAGATCAAGCTATGGCTCTTGATATTGATTCTGGTTTTTTCAATAACCAAAACAGTTTAAATACTAAATTATCATCTGAATCTCACAAAGGAGAGGCAAGAGAGATTGCTACATCAGCCGGTTCACTCAATACTATACCTGGCCGATTGACTGGGATTGCAGCTCAAACTGGAAATTTGGATCTAGCCTCTTGCAAGGATGTGGAACTGATGCCCCGAGCTGAAGTTGCTGCGGAAAAATCCTTAACTTATGGCAATAAGAACAGACAATGCATAGCTTTTATTGAATCCAAGGGACGGCAGTGTGTTAGGTGGGCTAATGAGGGTGATGTTTACTGTTGTGTTCATTTGTCCTCTCGTTTCACTGGCAACTCCGATAAGAAAGAGCAGACTCGTTCTGTCGAATCGCCGATGTGCCAAGGTACTACTGTTCTTGGAAGTAGGTGCAAGCATCGATCCTTGTTTGGCTCCTCGTTCTGTAAGAAGCACAGACCAAGGGGTGAAACAAAAACAGAGTCCACTTCCGTTGGAAATAAGCTCATTGAGAAGCAACAAGACATTTATAGTGTAGAAGATGCCAGTAATAAAGAAATTCCCCTTGGGGTGGACGAGGGTGATGTGACCAATAATGGAAACAGCTCGTCTGACAAGCTTGAACATCATGGAAAAGATTCTATTGCCTCGGAGCTTCGACATTGTATTGGGTCTTGCGAACATATTGACAGTAATCCATGTTTAGAAAGCCCAAAACGCCATTCCCTTTATTGTGAAAAACACCTACCTAGCTGGCTTAAACGGGCGAGAAATGGTAAGAGTAGAGTAATATCAAAGGAAGTATTCATGGATCTTTTAAGAGACTGTGACTCACAAGAGCCAAAAATACATTTGCATCAAGCTTGCGAGCTATTTTACAGGCTTTTTAAAAGTATTTTATCACTGAGGAATCCAGTTCCTATGGAGGTTCAATTTCAATGGGCACTTTCTGAAGCTTCTAAAAATTTGGGAGTTGGAGAACAATTTTTGAAATTGGTTTGTCGTGAAAAGGAAAGATTAAAAAGGATATGGGGATTTGATGCTGAAGACGCACAACTTTCCTCACCTTCAATGGGAGCAGCAACTTCAGGGGCATTATTAACTTCAGGTAATTGCGGTGATGATATGAGTATCAGATGCAAAATTTGCTCAGAAGAATTTCTTGATGATCAAGCACTCAGTACTCACTTCATGGATGGCCATAAAAAGGAAGCACAGTGGTTGTTCAGAGGTTATGCTTGTGCCATCTGCCTAGATTCGTTCACCAATAAGAAAGTTTTAGAAACTCATGTGCAGGAGAGACACCATGCACCATTTGTTGAGCAATGCATGCTTCTGCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATTCCGAACAATTATGGTTGCATGTAGTTGCTGTTCATCCGAATGATTTTAGATTGTCAAATTCTAGTAGGCGGCAGAATTCTTCTTCTGGTGAGGATTCCCCAGTCAAACCCAAGCAGTGTAATATAGTTTCTAAGGAAAATGACAACAAGAATGTAGGAGGTTTACGAAAGTTTAACTGTAGGTTCTGTGGTTTGAAGTTTGATTTACTGCCTGATCTCGGTCGTCACCATCAAGCTGCACATATGGGGCCAGGTTTAGTTAACTCTCGACCTGCAAAGAGGGGATTTAATTATTATGCTTATAAATCAAAGTCTGGGAAACTTGGTCATCCTAGATTTAAGAAGACTAAGGCAGGTGTGTCAAATAGGATCAGAAACAGAACAAAAGCTAGCATGAAAAAACATATCCAAGCTTCAAAGTTACTAAGCACAGGAAGTGTAGATCTTCAACCTCATGTGTCCCAGTTAGCAAGTTCTCGTAAATTAACCCAAGGTTCAATTGTTGCCAAGGCATTTGTTTCTGAGATTCAGAAAAGAAAACTATCTCCTACCAATATTGACATTTTGTCTATTGCTCACTCTGCCTGTTGCAAGGTCAAATTTAAAGTCCTTCTGGAACAGAAGTTTGGAGTATTACCAGAGTATTTTTACCTTAAGGCAGCTGAATTATGCAGGGAAAAAGGTGAAGTTAGCTGGAATATGAAGGGATTTGTTTGTCCTAAAGGATGTGAGTCATATCCTCTTTTGATGCCTCATCCAAATGGTTTTGGAGACAACAAGAATGCATGCACTCTTGATCCTGTGAATAGCAAATGGAAAGATCATCTTTCAAGCCAGCAGTTTAGGGAAAAGACTGTTGTTTTGTGTGAAGATATAAGCTTTGGCCAGGAATTAGTTTCTGTGGTCTGTGTAGCTGATGATGGTCAAAATGTTGGAAACTCGGTGCCTTGGGAGAATTTTATCTACATTAAGAAACCATTGCTTGATAAATCCCTCGTCATTGACACAGAGAGTCTGCAGTTCGGATGTGCCTGCTCTCATTTACTCTGTTCTTCCGAAACATGTGATCATGTATACCTCTTTAATAGTGATTACGAAGACCCAAGGGACATTTATGGGAATCCCATGCGTCGCAGGTTCCCATATGATGAGAATGGTCAAATTATTCTGGAGGAAGGTTACCTTGTCTATGAGTGTAATGAAAGGTGTAGCTGTAGTAGGGCCTGTCCAAATAGAGTGTTGCAAAATGGAGTTCAAGTGAAACTTGAAGTCTTCATGACAGAGACAAAGGGATGGGCGGTGAGGGCTGGTGAAGCAATCATGCGTGGTACATTTGTTTGCGAGTATGTTGGGGAGGTGTTGGATGAGCAGGAAGCAAACAGGAGACGTGACAAGTATAACAGCGAAGGCAACTGCTATTTCTTGGATGTGGATGCTCATATTAATGACATTAGCAGATTGGTTGACGGATCAGCCAGATATATTATTGATGCCACAAATTATGGAAATGTTTCGAGATTTATAAATCACAGTTGCTCACCAAATCTTGTAACTTACCAAGTCCTTGTCGAAAGCATGGAATATCAACGCTCACACATTGGATTGTATGCTAACCGGGATATAGCTACGGGTGAAGAGTTGACATTCAATTACCGACGTGAGCTACTGCCCGTAGGAAGTGGCTGTGAATCTTCAAGTTGCTGA 4392 41.73 MEVVPLSDVQHVDEEQQHHSDSATKISLFYDGQSSNNCIDLQPPMPNVELNHLPLNLGDPQINTQCDFQPPPQFLPASTHCSSDSYSNYLMDAQKPSCASPDSEFDDANTDNYSTESCLASENSRIVVDTIEDDLPTNSKPEELSVSGPHPMWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVVFFPHTRNYSWADALLVRSIEEFPQPIAYKSHKAGLKLVEDVKVARRFIMKKLSVGMLNIIDQFHLEALIESARDVVTWKEFAMEASRCNGYSDLGRMLIKLQNMIVQCFINSDWLHNSLHSWVHRCQNAQTAEIIEMLKEELADAILWDKVKSHGDAPVQPTFSSVWKTWKHEVTKWFSISPTLPITKDKEQQTVEAFLATALQVSRKRPKLEVRRAEAHASLVESKCSDQAMALDIDSGFFNNQNSLNTKLSSESHKGEAREIATSAGSLNTIPGRLTGIAAQTGNLDLASCKDVELMPRAEVAAEKSLTYGNKNRQCIAFIESKGRQCVRWANEGDVYCCVHLSSRFTGNSDKKEQTRSVESPMCQGTTVLGSRCKHRSLFGSSFCKKHRPRGETKTESTSVGNKLIEKQQDIYSVEDASNKEIPLGVDEGDVTNNGNSSSDKLEHHGKDSIASELRHCIGSCEHIDSNPCLESPKRHSLYCEKHLPSWLKRARNGKSRVISKEVFMDLLRDCDSQEPKIHLHQACELFYRLFKSILSLRNPVPMEVQFQWALSEASKNLGVGEQFLKLVCREKERLKRIWGFDAEDAQLSSPSMGAATSGALLTSGNCGDDMSIRCKICSEEFLDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHAPFVEQCMLLQCIPCGSHFGNSEQLWLHVVAVHPNDFRLSNSSRRQNSSSGEDSPVKPKQCNIVSKENDNKNVGGLRKFNCRFCGLKFDLLPDLGRHHQAAHMGPGLVNSRPAKRGFNYYAYKSKSGKLGHPRFKKTKAGVSNRIRNRTKASMKKHIQASKLLSTGSVDLQPHVSQLASSRKLTQGSIVAKAFVSEIQKRKLSPTNIDILSIAHSACCKVKFKVLLEQKFGVLPEYFYLKAAELCREKGEVSWNMKGFVCPKGCESYPLLMPHPNGFGDNKNACTLDPVNSKWKDHLSSQQFREKTVVLCEDISFGQELVSVVCVADDGQNVGNSVPWENFIYIKKPLLDKSLVIDTESLQFGCACSHLLCSSETCDHVYLFNSDYEDPRDIYGNPMRRRFPYDENGQIILEEGYLVYECNERCSCSRACPNRVLQNGVQVKLEVFMTETKGWAVRAGEAIMRGTFVCEYVGEVLDEQEANRRRDKYNSEGNCYFLDVDAHINDISRLVDGSARYIIDATNYGNVSRFINHSCSPNLVTYQVLVESMEYQRSHIGLYANRDIATGEELTFNYRRELLPVGSGCESSSC* 1464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6377678 6386908 + Chy2G032260.1 Chy02g00959 220407

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00959 1463 SMART set_7 1316 1454 IPR001214 GO:0005515
Chy02g00959 1463 Pfam Zinc finger C2H2-type, 3 repeats 853 978 IPR040689 -
Chy02g00959 1463 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1463 - -
Chy02g00959 1463 ProSiteProfiles Pre-SET domain profile. 1237 1313 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Chy02g00959 1463 Pfam SET domain 1327 1447 IPR001214 GO:0005515
Chy02g00959 1463 ProSitePatterns Zinc finger C2H2 type domain signature. 956 977 IPR013087 -
Chy02g00959 1463 Pfam Pre-SET motif 1188 1308 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Chy02g00959 1463 ProSiteProfiles SET domain profile. 1316 1448 IPR001214 GO:0005515
Chy02g00959 1463 Gene3D Classic Zinc Finger 847 929 - -
Chy02g00959 1463 SMART c2h2final6 817 840 IPR013087 -
Chy02g00959 1463 SMART c2h2final6 851 874 IPR013087 -
Chy02g00959 1463 SMART c2h2final6 954 977 IPR013087 -
Chy02g00959 1463 SMART c2h2final6 885 908 IPR013087 -
Chy02g00959 1463 MobiDBLite consensus disorder prediction 1 23 - -
Chy02g00959 1463 ProSitePatterns Zinc finger C2H2 type domain signature. 819 840 IPR013087 -
Chy02g00959 1463 ProSiteProfiles Zinc finger C2H2 type domain profile. 954 982 IPR013087 -
Chy02g00959 1463 ProSiteProfiles Zinc finger C2H2 type domain profile. 851 874 IPR013087 -
Chy02g00959 1463 ProSitePatterns Zinc finger C2H2 type domain signature. 887 908 IPR013087 -
Chy02g00959 1463 SMART preset_2 1185 1300 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Chy02g00959 1463 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1463 - -
Chy02g00959 1463 MobiDBLite consensus disorder prediction 7 21 - -
Chy02g00959 1463 MobiDBLite consensus disorder prediction 627 649 - -
Chy02g00959 1463 Gene3D SET domain 1164 1451 IPR046341 -
Chy02g00959 1463 SUPERFAMILY SET domain 1178 1451 IPR046341 -
Chy02g00959 1463 MobiDBLite consensus disorder prediction 915 935 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00959 - - - csv:101223040 2958.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00959 Chy-Chr2:6377678 Chy06g02091 Chy-Chr6:25093620 1.91E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17511 PF18868 zf-C2H2_3rep 1.00E-67 CL0361 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00959 Chy_Chr02 FPKM 0.238506 0.0 0.850255 0.627698 6.705591 9.860675 7.317162 0.691144 0.201533 0.345127