Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00962 ATGGCTGAAATAAGGTTAGCTAGATTAGAACAAGGCCAAACCAAGATTAAAAATGTGCCAATTGCTGTAACCCCAGAAGGTTTTTGGTGCTGTCCTTCTCCTGTTGTTTTCCAAAAGACCCTCAAAAGTCAAAATCCCCTAAACAAGCCCAAACCTGCCTCCCCTCCCTCAAAGATTCCTGTTGAGAAGAAATCGACCCCGGTGACTGATAGAAAGCCACCGCTTTCAAGATCAAGGTCGGCTGCTGTTTCTGATGATGACCGAAAAGGCAATGCTGATGCTTCTGGCTATAGTGCCCCAGAGGTTGTACACAGGACATCACGGCCTAAGGTTGAAAATATGCCAAGGAAAATAGCAATTGAGTTCGGTGAGCCAGGGACAAGTAATATAAAGGTCGTTTTACTTGGGAAGCAAGGATTTTCAGTGAAGTTGAGTGTTCATAAAAACGTTTTGATGGATAATAGTTCTTTCTTTGCCAATAAGCTCGCTGATCAAGAAGGTCCTTCGATGGAAATTGGTGATTGTGAAGATGTTGAAATATATGTTGAAACCGTGGGATTGATGTACTGCAAAGAAATGAAGCAATGGCTGATGAAGCAAAATGTTTCTCGTGTTCTGCGAATTCTTAAGGTTGCTGAGTTTCTTGGTTTTAAGTCATGCATGCAGTCATGTCTAGAATATTTGGAAGCAGCCCCTTGGGTTGGTGACGAAGAAGAAGAAAAGGTTGTCACGTCCATCCTACGACTTCAAAGTGAAGGCATTGGGGTGAGCCCAGTATTGAAACGAGTGTCTGCAGACGTGTCTAAGCCCCATAAAGATACTCTTTCTCATATCATCGAACTTGTTCTCAGAAGCAATGAGGAGAGAGGCCGACGTGAAATGAAACTGGTAGTGCTAAGGCTTCTTAGGGAAAACCAGAGTGTATCGAGCAATGCGAGTTCAACTGACATCTGCAATGAAATCATTTACTCTTCTTGTAGAAGCTGTTTGGCGTCGCTGTTGTTCCTGTTCCAGCAGGCGGCTGAAACAGATTTTACTGACAGATCAGTGGACAGGAAAGAACCAGTGCTGAAGCAAATTACTCTAGAGGCCGATAATCTCTCGTGGTTGCTTGAGATATTAGCTGACAGGCAAGCAGCCGATGAGTTTGCAGTAATGTGGTCAAAGCATCAGGAACTAGCAACCCTCCATGCGAAGTTGCCTATCGTCTCTCGCTATCATATTAGCTGCATAACAGCTAGGCTATTTGTTGGCATTGGCAAAGGAGAGCTGTTACCGGCAAAGGATACACGAAAATTGTTGTTACATACATGGTTAGAGCCGTTAATCAATGATTATAGCTGGTTAAAACACGGTTGCGGGTCATTTGATCGAAAGGTTGTGGAAGAAGGAATTGGTCGGACAATTCTCACTCTTCCACTGGAGGATCAGCAAAGCATTTTGCTAACATGGTTAGGCAGTTTTCTAAAGGTTGGGGATAGTTGCCCAAACCTCCAAAGAGCATTTGAGGTTTGGTGGCGTCGGACATTTGTTCGACCTTACGTTGAGACACAAGGAAGCATTCACCAGCAAGATTGCTCAATCACACCCCAGTTGGAGCCTTGA 1605 44.17 MAEIRLARLEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKTLKSQNPLNKPKPASPPSKIPVEKKSTPVTDRKPPLSRSRSAAVSDDDRKGNADASGYSAPEVVHRTSRPKVENMPRKIAIEFGEPGTSNIKVVLLGKQGFSVKLSVHKNVLMDNSSFFANKLADQEGPSMEIGDCEDVEIYVETVGLMYCKEMKQWLMKQNVSRVLRILKVAEFLGFKSCMQSCLEYLEAAPWVGDEEEEKVVTSILRLQSEGIGVSPVLKRVSADVSKPHKDTLSHIIELVLRSNEERGRREMKLVVLRLLRENQSVSSNASSTDICNEIIYSSCRSCLASLLFLFQQAAETDFTDRSVDRKEPVLKQITLEADNLSWLLEILADRQAADEFAVMWSKHQELATLHAKLPIVSRYHISCITARLFVGIGKGELLPAKDTRKLLLHTWLEPLINDYSWLKHGCGSFDRKVVEEGIGRTILTLPLEDQQSILLTWLGSFLKVGDSCPNLQRAFEVWWRRTFVRPYVETQGSIHQQDCSITPQLEP* 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6393775 6396771 + Chy2G032290.1 Chy02g00962 220410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00962 534 MobiDBLite consensus disorder prediction 42 108 - -
Chy02g00962 534 PANTHER BTB/POZ DOMAIN PROTEIN 1 523 - -
Chy02g00962 534 SUPERFAMILY POZ domain 142 229 IPR011333 -
Chy02g00962 534 Gene3D Potassium Channel Kv1.1; Chain A 124 230 IPR011333 -
Chy02g00962 534 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 523 IPR038920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00962 - - - csv:101204292 1025.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00962 Chy-Chr2:6393775 Chy09g01248 Chy-Chr9:14538533 1.26E-112 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00962 Chy_Chr02 FPKM 27.735399 25.659441 22.071936 22.435753 18.328592 18.924341 18.794348 5.213646 5.445275 6.925278