Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00963 ATGGGAATCGCAAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCAAGGAATCTTCACCTTCTCTAATGCCACCAGCTTCGACAAATCCAATCCATCCTCCCTCCCCGCCCAACACATCCGCCCTGACAAGCTCCGTCTTGAATCTTTCTCAGACTCCATCCCTCCACCACCATCCCACCTCGTCGGAATAGACGAACACCATCACCAACAACAACTTCATCATGTCTTTGCCTCCCCATCTAGTGGGGGAACCATGTTATCTGACATGTTCAATTTCCCTCCCACTACTCCCTCCGCCGCGGCTACTACGGTCGAATTCTCCGACAATTTTCGAACTTTACGCCCCCCTAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCGCAACCACGATCCCCTTCGCCACCCTCGACTTCCTCCACTCTCCACATGCTCCTCCCCAACCCACCTGCGAACCCTCTCCAGGGTTTCGAAGGTGGGGTTGGCGTCGGAGACCAAACGACGGCTTTTGGACAATTCGCTGTCGTAGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCTTCCTTACAACACTTGGAGGACGCTGCTGTTGCGAAAGCGGGTGAATTACGAATTAGGGATGGTGGGATTTTGTATAATTATAACAGCAACAACAATCAAGTCCATGGTGATGGAGGAAGTGGATCAACATCCTCAATTTTGCAATATTCTTTTAGGAATAATGAGAATTCTCCTCATAGCTTTCAAGCTAATTCACAAATAATGAATAATCCCAACAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTCAATGTATTGAGGAATTCAAAATATGTCAAACCTGCACAAGAATTGCTCGAGGAGTTTTGCAGTGTTGGGAAAGTTCAAATGAAGAAGAACAAGTTCAATATTAAACCAAACCCCAATACTGAATCCGCTACCAACGCCACCGCCACCACTTCCGCCGCAGCTACCGGTGGCTCAACATCTAAAGATCAACCTCCCTTATCGGCTGCTGACAGAATTGAACATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTGGAACGTAGATATAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCATTCGACCTAGTGATGGGGTTTGGGGCAGCAGCACCTTACACGACGTTGACACAAAAGGCAATGTCGAGGCACTTTCGGTGCTTGAAAGACGCAATAGCTGAGCAGTTAAAGCAGAGCTATGAGGCGTTAGGGGAGAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGTGAGACACCAAGGTTGAAACTTCTTGAACAAAGCCTTAGGCAACAAAGGGCTTTCCATCAAATGGGGATGATGGAACAAGAAGCTTGGAGACCACAGCGTGGCCTTCCTGAACGATCTGTCAACATTCTCAGAGCTTGGCTTTTCGAGCATTTTCTTCATCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGCAAAGTTGATACAGATCAACAATCACAAGAGGATACCCCACAAAATAATAACAACAATAACAGTAATAAAACACAAAATAATGCCATAAATCAACAAAATCCAACCACCGGCGCCGTGGAAGAAGTAGGAGCGGAGTACACGGCGGGGCATGACTACTCCGATTTGCATGATGTGTGGCGACACGGAAGTAGTGGATCAGATCATCAACAACATTATGGGACCATGCCTGAGGATGTTACTGCGGCGGCTGACATGAATCCTGGACCAACACTTATACGATTTGGGACCACGAACACTGCCACTGGTGACGTTTCCCTCACGTTAGGCCTCCGCCATGCCGGAAACACCTCCGCCGCCCCCGCCGCTGCCGTGGATAATCCTTCTTTCTCTCTCAGAGACTTTGGTCAGTCTTAA 1995 47.62 MGIAKGPLILSNKATSCANSSMSHDYHHQGIFTFSNATSFDKSNPSSLPAQHIRPDKLRLESFSDSIPPPPSHLVGIDEHHHQQQLHHVFASPSSGGTMLSDMFNFPPTTPSAAATTVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPPSTSSTLHMLLPNPPANPLQGFEGGVGVGDQTTAFGQFAVVESQGLSLSLHSSSLQHLEDAAVAKAGELRIRDGGILYNYNSNNNQVHGDGGSGSTSSILQYSFRNNENSPHSFQANSQIMNNPNNHQVQIGFGSSLGVVNVLRNSKYVKPAQELLEEFCSVGKVQMKKNKFNIKPNPNTESATNATATTSAAATGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGKVDTDQQSQEDTPQNNNNNNSNKTQNNAINQQNPTTGAVEEVGAEYTAGHDYSDLHDVWRHGSSGSDHQQHYGTMPEDVTAAADMNPGPTLIRFGTTNTATGDVSLTLGLRHAGNTSAAPAAAVDNPSFSLRDFGQS* 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6403463 6408346 - Chy2G032300.1 Chy02g00963 220411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00963 664 MobiDBLite consensus disorder prediction 526 559 - -
Chy02g00963 664 MobiDBLite consensus disorder prediction 328 363 - -
Chy02g00963 664 MobiDBLite consensus disorder prediction 140 156 - -
Chy02g00963 664 Pfam Associated with HOX 298 434 IPR006563 -
Chy02g00963 664 Coils Coil 374 401 - -
Chy02g00963 664 CDD homeodomain 487 527 IPR001356 GO:0003677
Chy02g00963 664 SMART prehox3 293 435 IPR006563 -
Chy02g00963 664 MobiDBLite consensus disorder prediction 527 559 - -
Chy02g00963 664 Gene3D - 493 558 - -
Chy02g00963 664 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 75 645 - -
Chy02g00963 664 MobiDBLite consensus disorder prediction 328 361 - -
Chy02g00963 664 MobiDBLite consensus disorder prediction 136 166 - -
Chy02g00963 664 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 645 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00963 - - - csv:101202767 1177.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00963 Chy-Chr2:6403463 Chy09g01251 Chy-Chr9:14557463 1.00E-71 dispersed
Chy11g00155 Chy-Chr11:1554166 Chy02g00963 Chy-Chr2:6403463 7.36E-09 transposed
Chy11g00154 Chy-Chr11:1548961 Chy02g00963 Chy-Chr2:6403463 2.66E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g900 . . Bda04g00315 . . . Bma09g00348 . . . . Cma07g00746 . Car07g00733 . . . . . . . . . . . . . . . . . . . . . Lsi01g01043 . . . . . . Bda14g01214 . Bpe06g00242 Bma03g01078 . . . Cmo07g00766 . . . . . . . . . . . . . . . . . . . . . . Chy02g00963 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001529 2 2 2 2 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 4 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00963 Chy_Chr02 FPKM 17.511509 14.678682 19.402658 15.181295 28.409641 30.253176 32.122894 26.457951 27.614487 26.191116