Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00964 ATGGAGTGGACAAGCAATATTGAAAGTACCTTAGGAAGTAATCGCGGCAGAAATGGACATGAGAACTTCTCACTTCTGCACCTGTTTCAACATTTAAATGGTGGCGTATATGATCAAGAGGAAGTTGATTATGCTAAGGCAGTATCACTCTCAGAAATGGAAGCTGTAAAGCAGGAAGAATTGATCATTGATAAACAAAAGATGAAAGTCATCACATCCCAAATTGAAGAAGATGAGGAGCTCGCCAATGCAATGCAACTGAGCTTAGTCATGGAATCTTCTCTTTCAAATGACAGTGCACATGCTTCTTCCTCTCGACCTTTTCTGGACTCTGCATCCAAGATAATCTGTGCTAGATGCAATACCGAGATAAGCATGCGCAAACATGTTTTTGAATATAATGGTATTGTTTGGCATATCGAATGTCTCGTATGTCATACTTGCAAACAACTAATCAAAGATGATGAGTTATGCATGTTTGAAAATCGACCTTATCACACATCTTGTCCAAGGAATTTGAGGCATTCTAAATGCTATGTATGCAACAACTTTATCCCACATAGTAATGGAGTGGTTGAATTTCGAGAGCATCCTTTTTGGAAACAAAAACATTGCCCTTCCCATGCAACTGATGGAACTTCCATTTGTGTTAGTTGCGAAAGATTACAGCCAAAAGGAATCAACTACATTCTACTTAAAGATAGCAGAAGCTTGTGTCCAGACTGTTCTAGCTTCAAGATTATGGACACCAATGAGTGCCAGCCTCTCTTCCATGAGATACAAGAATTCTTCTCAAGTTTAAACATGAAACTTAACCAAGAAATTCCATTGGGGATGGTTGAAAGGGAAGCATTGAACAATGCCATGGAAGGGGAAAAGAATGGACATCACCATTCGTCCGAAACTCGTGGGCTCTGCTTGTCAGAAGAGCAAACCATTCCCATTATTCATGAGAGGAAACATATTGGGAGTCGTTCAATCTTTGAGTTACTCACAAAGCAACGCAGACTTGTTCATAATTGTGAAGTTACGGCTATACTCATCCTATATGGCCTTCCCAGATTGTTGACAGGATCCATTCTAGCACATGAGATGATGCATGCTTGGTTAAGGCTTCAAGGTTATCCGAATCTAAAACCAGAAATTGAAGAAGGTATCTGCCAAGTCCTAGCTCACATGTGGCTGAAATCCAAAATCAATGTGGGATCTGAAACTGCCATGGCTGCTGCTAGTTCATCTTCTTCCCTGCGACCTCCACGTTCAAACAAGGACAAGAAATTGAGTGAAATAGAGAAGAAACTTGGCGAATGTTTCATACGCCAAATCGAACTGGATGAATCACAAGCCTATGGAGATGGGTTCAGGGTGGGAGAGCAGGCAGTTTCCAAGTATGGTTTGAAGGAAACTCTTGATCATATCAAACTCACTCAAACTTTCCCAGTTTGA 1446 40.73 MEWTSNIESTLGSNRGRNGHENFSLLHLFQHLNGGVYDQEEVDYAKAVSLSEMEAVKQEELIIDKQKMKVITSQIEEDEELANAMQLSLVMESSLSNDSAHASSSRPFLDSASKIICARCNTEISMRKHVFEYNGIVWHIECLVCHTCKQLIKDDELCMFENRPYHTSCPRNLRHSKCYVCNNFIPHSNGVVEFREHPFWKQKHCPSHATDGTSICVSCERLQPKGINYILLKDSRSLCPDCSSFKIMDTNECQPLFHEIQEFFSSLNMKLNQEIPLGMVEREALNNAMEGEKNGHHHSSETRGLCLSEEQTIPIIHERKHIGSRSIFELLTKQRRLVHNCEVTAILILYGLPRLLTGSILAHEMMHAWLRLQGYPNLKPEIEEGICQVLAHMWLKSKINVGSETAMAAASSSSSLRPPRSNKDKKLSEIEKKLGECFIRQIELDESQAYGDGFRVGEQAVSKYGLKETLDHIKLTQTFPV* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6421088 6424592 + Chy2G032310.1 Chy02g00964 220412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00964 481 CDD LIM 117 169 - -
Chy02g00964 481 Pfam LIM domain 117 165 IPR001781 -
Chy02g00964 481 Pfam Protein DA1 267 475 IPR022087 -
Chy02g00964 481 ProSiteProfiles LIM domain profile. 115 176 IPR001781 -
Chy02g00964 481 PANTHER PROTEIN DA1-RELATED 1 52 481 - -
Chy02g00964 481 Gene3D Cysteine Rich Protein 101 175 - -
Chy02g00964 481 ProSitePatterns LIM zinc-binding domain signature. 117 152 IPR001781 -
Chy02g00964 481 SMART lim_4 116 169 IPR001781 -
Chy02g00964 481 PANTHER PROTEIN DA1-RELATED 2 52 481 IPR045218 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00964 - - - csv:101204053 921.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00964 Chy-Chr2:6421088 Chy11g00170 Chy-Chr11:1650904 1.83E-157 dispersed
Chy01g00005 Chy-Chr1:38800 Chy02g00964 Chy-Chr2:6421088 2.66E-29 wgd
Chy02g00964 Chy-Chr2:6421088 Chy03g01493 Chy-Chr3:17326689 2.05E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g902 . . . . . . . . . . . Cma07g00747 . Car07g00734 . . . . . . . . . . . . . . . . . . . . . Lsi01g01044 . . . . . . . . . . . . . Cmo07g00768 . . . . . . . . . . . . . . . . . . . . . . Chy02g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010044 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7 2 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17512 PF12315 DA1-like 6.30E-89 CL0126 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00964 Chy_Chr02 FPKM 6.961686 4.452805 7.545502 3.031604 7.070433 8.940883 7.588312 7.562031 5.653705 6.749144