Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00965 ATGGATTCTTTCCAATTCCATTTATTCACCGCTTCTCTGTTTTGCTTCTTCTCTTTCATTGTTTCTCAGCAACCCTACGCCGGATCCACCACCGCTGACTGTGCCGTCACCCACAATTCAACCGGCAATTTGGGTTACTTTTGCAACACCCCCAATCGAAATTGCCACTCCTTCCTCACCTTCAGATCTCGGCCTCCATTTAACTCTGTTTCCTCCATTGCTACTCTCTTAGGTTCCGACCCCTCCGAGCTCTCTCGGGTCAACTCCGTCAACGCCTCCGCCACTTTCCCCCCGGAGAAATTGGTGCTTGTTCCAACCACTTGCTCCTGTTCGGGTCAGTTTCTTCAATCAAATGTTTCTTTTACGACACGAACCGGTGATTCTTACTTTGCCATTGCAAATGAAACCCTGCAAGGTCTCTCCACTTGTCAATCTCTTATATCTCAGAATCCCACTATTAGTGTCACGAGTATAAGGGGTGGGGAAAGAATTCTTGTTCCTCTTAGATGTGCTTGTCCCACCAAGAATCAGACTGATATGGGTTTCAATTACCTTTTGAGTTACTTGGTTGTATTCGGTGATACTGTTTTTGATATCGCTCAAATATTTGAATCATTTGGTGCGGATATGGGGATTATTCTCGATGCCAACGAGCTTCAAGGAAGTTCCTTCGTCAACCCTTTTACAACTCTTTTAATTCCCCTTAAAACTGAGCCGTCGAGCACTGGAATGAAGGAGCCTAATTCATCCCCACCACCGCCGCCGTCTCTGCCCACTTCTCCCTCTCCGGCCTCTAAAAGAACATGGGTTTATATCCTTGTCGCCGTTGTCGGAGGAGTTGTTTTAGCAGCTGTAATTGGGGCTGTAGTTTTCTTTGCATGTGTGAGGAAAAGGAAGAAGAAAACTGAGCATATAGAAATTGATAGCTTTGAATCAACTGAGAAGACATCAGAGAAAAAGTTGGATGGAGATTCTTCTTCTATCACCTTGGAGAGTATATCTAGCGTTGTTCAATCTGTTAAAGCTTACACGTTTAAAGAGCTGCAGGATGCAACTGATAATTTCAGTTCAACCCATTTGATTAAAGGGTCTGTTTATCATGGCACAATCAATGGGGACTCTGCCGCTATTAAGAAGATGAATGGAGATGTGTCGAAACAGATCAATTTACTGAACAAGACGAACCATACGAATCTCATTCGCCTTTCCGGGGTTTGTTTTGAGGAAGGGCATTGGTATCTTGTTTTTGAGTATGCTGCCAAAGGTAACTTTCCCATTGAACTTGCTGTTCTTGGGATGAATATCGCCAAGCTATGCGTGAACAAGGATCCGTCTCAACGCCCGTCCATGGATGACATTGTTCAGTCCCTCTGTAGAATTTTGAGCAGTTCTTTATCTTGGGAATTGCCAAACACTTCTGTGTGA 1425 44.35 MDSFQFHLFTASLFCFFSFIVSQQPYAGSTTADCAVTHNSTGNLGYFCNTPNRNCHSFLTFRSRPPFNSVSSIATLLGSDPSELSRVNSVNASATFPPEKLVLVPTTCSCSGQFLQSNVSFTTRTGDSYFAIANETLQGLSTCQSLISQNPTISVTSIRGGERILVPLRCACPTKNQTDMGFNYLLSYLVVFGDTVFDIAQIFESFGADMGIILDANELQGSSFVNPFTTLLIPLKTEPSSTGMKEPNSSPPPPPSLPTSPSPASKRTWVYILVAVVGGVVLAAVIGAVVFFACVRKRKKKTEHIEIDSFESTEKTSEKKLDGDSSSITLESISSVVQSVKAYTFKELQDATDNFSSTHLIKGSVYHGTINGDSAAIKKMNGDVSKQINLLNKTNHTNLIRLSGVCFEEGHWYLVFEYAAKGNFPIELAVLGMNIAKLCVNKDPSQRPSMDDIVQSLCRILSSSLSWELPNTSV* 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6425884 6427797 - Chy2G032320.1 Chy02g00965 220413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00965 474 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 6 423 - -
Chy02g00965 474 Pfam Protein tyrosine and serine/threonine kinase 380 424 IPR001245 GO:0004672|GO:0006468
Chy02g00965 474 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 421 469 - -
Chy02g00965 474 Gene3D Phosphorylase Kinase; domain 1 327 418 - -
Chy02g00965 474 ProSiteProfiles LysM domain profile. 119 166 IPR018392 -
Chy02g00965 474 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 421 469 - -
Chy02g00965 474 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 423 - -
Chy02g00965 474 SMART LysM_2 120 167 IPR018392 -
Chy02g00965 474 SMART LysM_2 187 234 IPR018392 -
Chy02g00965 474 ProSiteProfiles LysM domain profile. 186 233 IPR018392 -
Chy02g00965 474 MobiDBLite consensus disorder prediction 238 261 - -
Chy02g00965 474 Pfam LysM domain 188 234 IPR018392 -
Chy02g00965 474 MobiDBLite consensus disorder prediction 246 261 - -
Chy02g00965 474 SUPERFAMILY Protein kinase-like (PK-like) 328 423 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00965 - - - csv:101203004 771.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00965 Chy-Chr2:6425884 Chy03g00117 Chy-Chr3:1106878 9.42E-50 dispersed
Chy02g00965 Chy-Chr2:6425884 Chy02g00968 Chy-Chr2:6441409 8.71E-24 proximal
Chy06g00523 Chy-Chr6:3554361 Chy02g00965 Chy-Chr2:6425884 2.00E-41 transposed
Chy02g00965 Chy-Chr2:6425884 Chy03g01492 Chy-Chr3:17324643 4.51E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g905 . . Bda04g00317 . . . Bma09g00351 . . . . Cma07g00750 . Car07g00737 . . . . . . . . . . . . . . . . . . . Cone6ag1352 . Lsi01g01049 . . . . . . . . . . . . . Cmo07g00772 . . . . . . . . . . . . . . . . . . . . . . Chy02g00965 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71057 PF07714 PK_Tyr_Ser-Thr 3.10E-05 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g00965 Chy_Chr02 FPKM 3.240942 2.848299 4.4475 5.801682 9.167201 8.395389 7.482864 148.973938 163.110962 149.872238