Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g00970 ATGGCGAATGAATTTGGTGAATCAACGACTCAAGACCCGATTATTACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTCAAGAGGAAAAGTTGGTTCCTCTTTATGGTAGGGGTAAAATACCATCTGATCCAAGATTAAATACATATCCTGGTCTTGATATTCCAAATCGTCCTGCTGGTCAAAGGCCTCAAACGGCACCACCTCCGGTTCCTAATGATTTTCCAAACTATGGATTTGGATTCGCTGGTGGCTTTATGCCAATGGCATCGGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCCACTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTTCTTTTACTTGTTGGTGTCTTTGTAATTCTTGCCCTGCTCTGGTGGTAG 594 42.26 MANEFGESTTQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNTYPGLDIPNRPAGQRPQTAPPPVPNDFPNYGFGFAGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW* 198
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 6454953 6455642 - Chy2G032370.1 Chy02g00970 220418
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Chy02g00970 197 SUPERFAMILY RING/U-box 10 56 - -
Chy02g00970 197 Pfam Ring finger domain 9 44 IPR001841 -
Chy02g00970 197 PANTHER RING ZINC FINGER PROTEIN-RELATED 9 196 - -
Chy02g00970 197 ProSitePatterns Zinc finger RING-type signature. 18 27 IPR017907 -
Chy02g00970 197 CDD RING-HC_AtRMA_like 9 45 - -
Chy02g00970 197 ProSiteProfiles Zinc finger RING-type profile. 18 44 IPR001841 -
Chy02g00970 197 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 9 196 IPR045103 GO:0005783|GO:0006511|GO:0061630
Chy02g00970 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 55 IPR013083 -
Chy02g00970 197 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00970 Chy-Chr2:6454953 Chy04g01788 Chy-Chr4:24171891 4.66E-21 dispersed
Chy02g00970 Chy-Chr2:6454953 Chy03g01490 Chy-Chr3:17316482 1.91E-69 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g00970 K10666 - csv:101205026 381.333