Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy02g00970 | ATGGCGAATGAATTTGGTGAATCAACGACTCAAGACCCGATTATTACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTCAAGAGGAAAAGTTGGTTCCTCTTTATGGTAGGGGTAAAATACCATCTGATCCAAGATTAAATACATATCCTGGTCTTGATATTCCAAATCGTCCTGCTGGTCAAAGGCCTCAAACGGCACCACCTCCGGTTCCTAATGATTTTCCAAACTATGGATTTGGATTCGCTGGTGGCTTTATGCCAATGGCATCGGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGGTTACCCTTATGCATTCAACACCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCCACTCGAGGTCAGCATGCTGATAACGTACTGAAAAACCTTCTTTTACTTGTTGGTGTCTTTGTAATTCTTGCCCTGCTCTGGTGGTAG | 594 | 42.26 | MANEFGESTTQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNTYPGLDIPNRPAGQRPQTAPPPVPNDFPNYGFGFAGGFMPMASARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW* | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 6454953 | 6455642 | - | Chy2G032370.1 | Chy02g00970 | 220418 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy02g00970 | 197 | SUPERFAMILY | RING/U-box | 10 | 56 | - | - | |
| Chy02g00970 | 197 | Pfam | Ring finger domain | 9 | 44 | IPR001841 | - | |
| Chy02g00970 | 197 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 9 | 196 | - | - | |
| Chy02g00970 | 197 | ProSitePatterns | Zinc finger RING-type signature. | 18 | 27 | IPR017907 | - | |
| Chy02g00970 | 197 | CDD | RING-HC_AtRMA_like | 9 | 45 | - | - | |
| Chy02g00970 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 18 | 44 | IPR001841 | - | |
| Chy02g00970 | 197 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 9 | 196 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Chy02g00970 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 11 | 55 | IPR013083 | - | |
| Chy02g00970 | 197 | MobiDBLite | consensus disorder prediction | 67 | 89 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy02g00970 | Chy-Chr2:6454953 | Chy04g01788 | Chy-Chr4:24171891 | 4.66E-21 | dispersed | |
| Chy02g00970 | Chy-Chr2:6454953 | Chy03g01490 | Chy-Chr3:17316482 | 1.91E-69 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy02g00970 | K10666 | - | csv:101205026 | 381.333 |