Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01002 ATGGAATCTCCCATTCATGTAAAGATTCGATTATTAATGGATGAGAGGGGGGTGAGCTTTATGAGAGGAAGAAATGCGATTGGAAATTATGGCGGTGACGATGATCACCACAATGAAAATGACGGGAAGCCTCGGTTGAGGGTGTCGACGATGAAGATGAAGCGGATAAAAGGTAGGAAGAAAGTGAGAGAGCCAAGGTTCAGCTTTAAAACGATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTATGGCCAAAAAGTTGTTAAGAACACCCTCCATCCAAGAAGTTACTATCGTTGCACGGAAGAGAATTGTAAGGTAAAAAAGAGAGTCGAAAGGTTAGCGGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCATTCGCCTTCGGATCATAATTTAGAAGATTCTTTCATGGGTCACTTACCTTCTTCCCACCTCACCAATTTCTTCTGCTAG 483 42.24 MESPIHVKIRLLMDERGVSFMRGRNAIGNYGGDDDHHNENDGKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSFMGHLPSSHLTNFFC* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6714319 6715859 + Chy2G032690.1 Chy02g01002 220450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01002 160 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 41 143 IPR044810 GO:0003700
Chy02g01002 160 Pfam WRKY DNA -binding domain 79 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy02g01002 160 Gene3D WRKY domain 65 131 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy02g01002 160 ProSiteProfiles WRKY domain profile. 73 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy02g01002 160 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 41 143 - -
Chy02g01002 160 SMART WRKY_cls 78 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy02g01002 160 SUPERFAMILY WRKY DNA-binding domain 70 137 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01002 Chy-Chr2:6714319 Chy06g00013 Chy-Chr6:100402 1.67E-45 dispersed
Chy02g01002 Chy-Chr2:6714319 Chy11g01581 Chy-Chr11:22383847 5.69E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17515 PF03106 WRKY 1.90E-25 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01002 - - csv:101208878 298.516