Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01003 ATGATACCCTTTTTCCCATCTTCTTCAAATTCCTTTCTAACCTTCTTTTTCTTCTTTGTCTCTCTTACTTTTCTTTTCTTCTCTGTTTCCTCTGTAACTCCTTCTTCTTCTCATGGTGATACTCAGAAGTTGGTTTCTTTTAAAGCTTCACTTCCGAATCCATCCCTTCTTCAGAACTGGCTTTCCAATGCTGACCCATGTTCGTTTTCTGGTATTACTTGTAAGGAAACTAGAGTCTCTGCTATAGACTTGAGTTTCTTGTCTTTGAGCTCTAATTTCAGTCATGTGTTTCCTTTGCTTGCGGCTCTTGACCATTTGGAATCGCTTTCTCTTAAATCTACTAACCTCACTGGCTCCATTTCTTTGCCCTCTGGATTTAAGTGTAGTCCTCTGCTTGCTTCTGTAGATCTGTCTCTTAATAACTTGTTTGGTTCTGTTTCTGATGTCTCCAACTTGGGGTTTTGCTCCAATGTTAAGTCGCTTAATCTGTCCTTTAACGCCTTTGATTTTCCTCTTAAAGACTCTGCTCCTGGATTGAAGCTTGATTTGCAGGTTCTTGATCTTTCTTCTAACCGGATTGTCGGGTCTAAATTAGTTCCATGGATTTTCTCTGGTGGGTGTGGTAATTTGCAGCACTTGGCATTGAAAGGAAACAAAATCAGCGGAGAGATTAATCTGTCGTCTTGTAGTAAACTCGAGCATTTGGATATCTCTGGCAATAATTTCTCTGTGGGTATTCCGTCGTTGGGTGATTGCTCTGTTTTGGAACATTTTGATATCTCCGGCAATAAGTTTACTGGCGACGTTGGACATGCTCTGTCTTCTTGTCAGCAACTCACCTTTCTGAATCTCTCCAGCAACCAATTTAGGGGTCCAATCCCTTCATTTTCATCTTCAAACATGTGGTTTCTTTCGCTTGCTAACAACGATTTCCAGGGGGAGATTCCTGTAAGTATTGCAGATTTGTGTTCTAGTTTGGTAGAGCTTGATCTTTCTTCTAATAGTCTGATTGGAGCTGTACCTACTGCTTTGGGGTCTTGTTTTTCGTTGCAAACTTTAGACATTTCGAAAAATAATCTCACTGGTGAGCTCCCCATTTCCGTTTTTGCCAAAATGAGTAGTCTCAAGAAACTCTCTGTTTCAGACAATAAGTTTTTTGGGGTTTTGTCGGATTCTCTGTCTCAACTCGCCATTTTGAATTCTTTGGATCTGAGTTCCAATAACTTTTCTGGGTCGATTCCGGCGGGACTTTGCGAAGACCCAAGCAACAATTTGAAAGAACTGTTTCTTCAGAACAATTGGTTAACAGGTCGAATCCCGGCGAGTATTAGTAATTGTACACAGCTGGTTTCTCTTGATTTGAGCTTCAACTTTCTTAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAAGGGGAGATTCCATCGGATTTTAGCAACTTTCAAGGGCTTGAGAATCTGATCCTGGATTTCAATGAGCTCACTGGGACCATACCGTCCGGGTTAAGCAACTGCACCAACTTGAACTGGATTTCATTGTCAAACAACCGGTTGAAAGGAGAGATTCCCGCTTGGATTGGGAGCTTACCGAACCTCGCCATCCTTAAGCTCAGCAACAACTCGTTCTACGGTAGAATTCCTAAGGAGCTCGGCGATTGTCGGAGCTTGATCTGGCTTGACTTGAATACCAATCTGCTGAATGGGACGATCCCTCCGGAGCTGTTTCGTCAATCTGGTAACATTGCTGTTAACTTTATCACCGGAAAATCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGTCATGGAGCTGGAAATTTGCTTGAGTTCGCTGGAATAAGACAGGAACAAGTGAATAGAATTTCAAGTAAGAGTCCCTGCAATTTCACAAGGGTTTATAAGGGGATGACTCAGCCCACTTTTAATCATAATGGTTCCATGATCTTTCTTGATCTTTCTCACAATATGTTGACTGGGAGTATTCCTAAGGAGATTGGTTCCACAAACTATCTCTACATTTTGGATTTGGGACATAACAGTCTTTCGGGACCAATTCCACAGGAGCTCGGCGACTTGACGAAGCTTAACATTCTTGATCTGTCTGGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTGTCCAACAATCATCTCAATGGTTCTATACCCGAATCAGCTCAGTTCGAAACATTCCCGGCATCAGGTTTTGCTAATAATTCTGGCCTTTGTGGTTATCCTCTTCCTCCATGTGTTGTTGATTCAGCAGGAAATGCAAATTCTCAGCATCAAAGATCTCATCGGAAACAGGCATCCCTTGCTGGGAGTGTTGCAATGGGGTTACTCTTCTCTCTTTTCTGTATTTTTGGTTTGATTATTGTCGTTATCGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTGCACTTGATTCTTATGTTGAGAGTCATTCTCAATCAGGCACAACAACAGCCGTTAACTGGAAATTAACTGGTGCCCGTGAAGCACTGAGCATCAATCTTGCAACATTCGAGAAGCCACTACGAAAGCTTACATTTGCTGATCTTCTTGAGGCTACAAATGGGTTCCACAACGATAACGATAGGTCATGGCGGCGACCAACAATGATCCAGGTAATGACAATGTTCAAGGAAATCCAAGCAGGGTCAGGGATGGATTCACACTCTACGATCGGAACTGACAACGGAGGATTCAGTGTCGACATGGTAGATATGAGCTTAAAGGAAGTACCAGAACCAGAAGGGAAGTAA 2841 42.31 MIPFFPSSSNSFLTFFFFFVSLTFLFFSVSSVTPSSSHGDTQKLVSFKASLPNPSLLQNWLSNADPCSFSGITCKETRVSAIDLSFLSLSSNFSHVFPLLAALDHLESLSLKSTNLTGSISLPSGFKCSPLLASVDLSLNNLFGSVSDVSNLGFCSNVKSLNLSFNAFDFPLKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSGGCGNLQHLALKGNKISGEINLSSCSKLEHLDISGNNFSVGIPSLGDCSVLEHFDISGNKFTGDVGHALSSCQQLTFLNLSSNQFRGPIPSFSSSNMWFLSLANNDFQGEIPVSIADLCSSLVELDLSSNSLIGAVPTALGSCFSLQTLDISKNNLTGELPISVFAKMSSLKKLSVSDNKFFGVLSDSLSQLAILNSLDLSSNNFSGSIPAGLCEDPSNNLKELFLQNNWLTGRIPASISNCTQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFSNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLKGEIPAWIGSLPNLAILKLSNNSFYGRIPKELGDCRSLIWLDLNTNLLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLTGSIPKEIGSTNYLYILDLGHNSLSGPIPQELGDLTKLNILDLSGNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPPCVVDSAGNANSQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSALDSYVESHSQSGTTTAVNWKLTGAREALSINLATFEKPLRKLTFADLLEATNGFHNDNDRSWRRPTMIQVMTMFKEIQAGSGMDSHSTIGTDNGGFSVDMVDMSLKEVPEPEGK* 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6730127 6733723 - Chy2G032700.1 Chy02g01003 220451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01003 946 SUPERFAMILY RNI-like 272 586 - -
Chy02g01003 946 Pfam Leucine rich repeat 496 554 IPR001611 GO:0005515
Chy02g01003 946 Pfam Leucine rich repeat 349 409 IPR001611 GO:0005515
Chy02g01003 946 Pfam Leucine rich repeat 685 743 IPR001611 GO:0005515
Chy02g01003 946 PANTHER SYSTEMIN RECEPTOR SR160 890 921 - -
Chy02g01003 946 PANTHER SYSTEMIN RECEPTOR SR160 15 889 - -
Chy02g01003 946 SUPERFAMILY L domain-like 652 771 - -
Chy02g01003 946 Gene3D - 597 657 - -
Chy02g01003 946 PRINTS Leucine-rich repeat signature 350 363 - -
Chy02g01003 946 PRINTS Leucine-rich repeat signature 706 719 - -
Chy02g01003 946 Gene3D Ribonuclease Inhibitor 44 775 IPR032675 -
Chy02g01003 946 Pfam Brassinosteroid receptor island domain 592 656 IPR045381 -
Chy02g01003 946 SMART LRR_typ_2 542 566 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 396 420 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 567 590 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 706 729 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 183 205 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 730 753 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 372 395 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 323 347 IPR003591 -
Chy02g01003 946 SMART LRR_typ_2 494 518 IPR003591 -
Chy02g01003 946 SUPERFAMILY L domain-like 38 297 - -
Chy02g01003 946 Pfam Leucine rich repeat N-terminal domain 39 74 IPR013210 -
Chy02g01003 946 Pfam Leucine Rich Repeat 449 470 IPR001611 GO:0005515
Chy02g01003 946 Pfam Leucine Rich Repeat 424 446 IPR001611 GO:0005515
Chy02g01003 946 Pfam Leucine Rich Repeat 231 248 IPR001611 GO:0005515
Chy02g01003 946 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 890 921 - -
Chy02g01003 946 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 15 889 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01003 Chy-Chr2:6730127 Chy12g01257 Chy-Chr12:17179541 1.68E-81 dispersed
Chy02g01003 Chy-Chr2:6730127 Chy02g00590 Chy-Chr2:3585818 3.53E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01003 K13415 - csv:101209118 1666.36