Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01024 ATGAGCTTAATGTCGAAGGCCGCCTTTGCCGCTGGTATGAACACTTATATATTTCTTTTCTATCGTCAAGCTGCTGGCAGTATCATCTTAGTTCCACTAACTCTGATCTTAAAAGGGAAGGAGAAGAGGCCATTGTCTTTGAAGCATCTCTGCCAAATTTTTGTCATTTCATTGATAGGGATTACTCTTGCATTGGATGCTTATGGAGTGGCTATTAATTACACATCAGCAACAATTGGAGCTGCCGCCTTCAATTGTGTTCCTGTCACTACATTCTTTTTTGCTGTTTTACTAAGGATGGAGAAGGTGAATCTAAAGAAAGCAGCAGGGATAGCAAAGGTAGTGGGGATAATGATATGCATAGCGGGTGCATCCATTCTTGCTTTGTACAAAGGACCCTATTTGAAGCCACTTTTCACTCACCAACTTTTCCACCATATCCATTCTCAATCCCACCATTCTCTTAATTCCCATACCAAATGGATGATCGGTTGTTTCTTCCTCCTCGTCACTAGCATTTCTTGGGGCATTTGGTTTGTTCTCCAGGCTCGATTCTTGAAGGGGTATCCTCACCCAATGGAGTTCATGTGCATGCAAACATTGATGAGTATGGTTCAAAGCTTTATTGTAGCCATTGTAATGGAAAGAGATCCTTTTGAGTGGAAGTTGGGTTTCAACATTAGACTCTTTGCTGTACTCTATTGTGGTGTATTGGTAATTGGAGTTGCAAATAATGCCCAATGTTGGGTAATAAGAGAGAAAGGTCCAGTTTTCCAAGCCATGACTACACCTTTGAATTTAATTGCAACAATAATCGGTTCCCAATTTCTCTTTCCCGATGGAACTTACTTGGGAAGAAAAGAAAGCCGACCCCTTTCACTTAAAGACTTCCTGAAGATTTTCATGATTTCGTTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTTGCTGTTGATTATACATCTGCCAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTCGCTGTTTTATTGAGGATGGAGAAAGTAAATTTAAGAAAAGTGGCAGGAATTGCAAAAGCTTTTGGAATATTAATATGCATTGGGGGGGTGATAACACTTGCATTCTACAAAGGTCCATATTTGAAGCCACTCATCAACCACCATCTTTTGAAATTTCACAAATCATCACATAATATTCCCCATTCTTCCTCTTCTAAAACTTGGATTATTGGCTGTTTCCTTCTCTTCATCTCCAGCATCTCTTGGGGTTTGTGGTTTGTTCTTCAGGCTTATTTTCTCAAGACATACCCATCACCATTGGAGTTTGTAAGTTACCAAACATTATTAAGCGCAGCCCAATCTTTTGTGATTGCTATTGCAATGGAAAGAGACCCTTCTGAGTGGAAATTGGGTTGGAATATTAGGCTTCTTGCTGTCGTTTATTGTGGAGTTCTTGTAACAGTTGTTTCAAATTTCTTGCAATGTTGGGTAATAAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACACCATTGAATGTCATTGCCACTATTATTGGCTCTGAATTGCTTCTAGGTGAAGGAATCAACTTGGGAAGTCTTATTGGTGCCTTTTTGTTGGTGATAAGTCTTTACAGTGTATTGTGGGGAAAAAGCAAAGAACTCAACGTGGTTGATTCAGATAGTAACAATCAAACAAATGTATTTGTTTCATTTCAAGTACCAAAAGATTTGTCGGAGATGAGACCAATGGCTGAACCATAG 1767 39.62 MSLMSKAAFAAGMNTYIFLFYRQAAGSIILVPLTLILKGKEKRPLSLKHLCQIFVISLIGITLALDAYGVAINYTSATIGAAAFNCVPVTTFFFAVLLRMEKVNLKKAAGIAKVVGIMICIAGASILALYKGPYLKPLFTHQLFHHIHSQSHHSLNSHTKWMIGCFFLLVTSISWGIWFVLQARFLKGYPHPMEFMCMQTLMSMVQSFIVAIVMERDPFEWKLGFNIRLFAVLYCGVLVIGVANNAQCWVIREKGPVFQAMTTPLNLIATIIGSQFLFPDGTYLGRKESRPLSLKDFLKIFMISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRKVAGIAKAFGILICIGGVITLAFYKGPYLKPLINHHLLKFHKSSHNIPHSSSSKTWIIGCFLLFISSISWGLWFVLQAYFLKTYPSPLEFVSYQTLLSAAQSFVIAIAMERDPSEWKLGWNIRLLAVVYCGVLVTVVSNFLQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAFLLVISLYSVLWGKSKELNVVDSDSNNQTNVFVSFQVPKDLSEMRPMAEP* 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6964902 6979694 + Chy2G032910.1 Chy02g01024 220472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01024 588 SUPERFAMILY Multidrug resistance efflux transporter EmrE 467 553 - -
Chy02g01024 588 Pfam EamA-like transporter family 265 366 IPR000620 GO:0016020|GO:0016021
Chy02g01024 588 Pfam EamA-like transporter family 5 116 IPR000620 GO:0016020|GO:0016021
Chy02g01024 588 Pfam EamA-like transporter family 411 549 IPR000620 GO:0016020|GO:0016021
Chy02g01024 588 SUPERFAMILY Multidrug resistance efflux transporter EmrE 292 376 - -
Chy02g01024 588 PANTHER WAT1-RELATED PROTEIN 286 564 - -
Chy02g01024 588 PANTHER WAT1-RELATED PROTEIN 286 564 IPR030184 GO:0016021|GO:0022857
Chy02g01024 588 PANTHER WAT1-RELATED PROTEIN 1 286 IPR030184 GO:0016021|GO:0022857
Chy02g01024 588 PANTHER WAT1-RELATED PROTEIN 1 286 - -
Chy02g01024 588 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01024 - - - bhj:120072940 667.537
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01022 Chy-Chr2:6920765 Chy02g01024 Chy-Chr2:6964902 1.13E-131 dispersed
Chy02g01024 Chy-Chr2:6964902 Chy02g01029 Chy-Chr2:7013454 2.40E-114 dispersed
Chy02g01023 Chy-Chr2:6942745 Chy02g01024 Chy-Chr2:6964902 9.80E-120 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi01g01126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g02809 Chy02g01024 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01024 Chy_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0