Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01031 ATGAATCTGGATGATCAATTATATGACGTGAATTTATGGAATGTTTTGAAAAAAATGGCCGATGCCGAGGATATTCAGCCCCTCGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCTAGGGCTGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACTGGTGTCATGGTTGGGATGGGCCAAAAGGATGCCTATGTTGGGGATGAAGCTCAGTCCAAAAGAGGTATTCTTACCTTGAAATATCCCATTGAACATGGTATTGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCTCCTGAAGAACATCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTACGCTAGTGGACGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTACGCCCTCCCTCATGCCATTCTTCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCCGAACGGGAAATTGTCCGTGACATGAAAGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCCTCTATTGAGAAGAACTACGAACTTCCTGATGGACAAGTCATCACCATCGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATACACGAAACTACTTACAACTCCATCATGAAGTGTGATGTAGACATCAGAAAGGACCTTTATGGAAACATTGTCCTCAGTGGTGGTTCAACTATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCACCACCCGAAAGGAAATACAGTGTTTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGATGTGGATCTCAAAGGGTGAATATGATGAATCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAA 1188 46.46 MNLDDQLYDVNLWNVLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF* 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7030507 7032078 - Chy2G032980.1 Chy02g01031 220479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01031 395 Pfam Actin 23 395 IPR004000 -
Chy02g01031 395 PANTHER ACTIN 19 394 IPR004000 -
Chy02g01031 395 SMART actin_3 25 395 IPR004000 -
Chy02g01031 395 ProSitePatterns Actins signature 2. 376 384 IPR004001 -
Chy02g01031 395 PRINTS Actin signature 46 55 IPR004000 -
Chy02g01031 395 PRINTS Actin signature 81 103 IPR004000 -
Chy02g01031 395 PRINTS Actin signature 160 179 IPR004000 -
Chy02g01031 395 PRINTS Actin signature 135 148 IPR004000 -
Chy02g01031 395 PRINTS Actin signature 256 272 IPR004000 -
Chy02g01031 395 PRINTS Actin signature 69 80 IPR004000 -
Chy02g01031 395 Gene3D - 28 389 - -
Chy02g01031 395 ProSitePatterns Actins and actin-related proteins signature. 124 136 IPR020902 -
Chy02g01031 395 CDD NBD_sugar-kinase_HSP70_actin 28 201 - -
Chy02g01031 395 ProSitePatterns Actins signature 1. 73 83 IPR004001 -
Chy02g01031 395 SUPERFAMILY Actin-like ATPase domain 166 395 IPR043129 -
Chy02g01031 395 Gene3D Actin; Chain A, domain 4 200 291 - -
Chy02g01031 395 SUPERFAMILY Actin-like ATPase domain 24 173 IPR043129 -
Chy02g01031 395 Gene3D - 158 358 - -
Chy02g01031 395 PANTHER ACTIN 19 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01031 K10355 ACTF; actin, other eukaryote - csv:101220617 758.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01031 Chy-Chr2:7030507 Chy04g01779 Chy-Chr4:24120671 0 dispersed
Chy01g00298 Chy-Chr1:2110223 Chy02g01031 Chy-Chr2:7030507 0 transposed
Chy01g01857 Chy-Chr1:24004539 Chy02g01031 Chy-Chr2:7030507 5.46E-66 transposed
Chy03g00095 Chy-Chr3:950914 Chy02g01031 Chy-Chr2:7030507 2.74E-53 transposed
Chy10g00535 Chy-Chr10:11933729 Chy02g01031 Chy-Chr2:7030507 2.20E-18 transposed
Chy11g00060 Chy-Chr11:639147 Chy02g01031 Chy-Chr2:7030507 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1241 . . . . . . . . Cmo02g00620 Cmo20g01080 Cma03g01077 Cma07g00783 Car03g00968 Car07g00770 Sed01g0035 Cpe19g00544 Cpe10g00351 Bhi03g01386 Tan03g1337 Cmetu11g0408 . Hepe04g1131 . . Cla01g01535 Cam01g1604 Cec04g1251 Cco04g1322 Clacu01g1630 Cmu01g1517 Cre04g1195 . . . . Lsi01g01130 . . Cme08g01062 . Blo06g00212 . . . Bpe06g00278 . . . . Cmo07g00807 . Cma20g01073 . . . Cpe16g00072 Bhi10g02339 Tan07g0883 . . Hepe08g1258 . . Cla02g00072 Cam02g0073 Cec02g0074 Cco02g0067 Clacu02g0071 Cmu02g0070 Cre02g0410 Lsi10g00709 Csa06g02804 Chy02g01031 Cme11g00076
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT2G37620 97.1 1.9e-215 745.0
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT2G37620 96.8 5.5e-215 743.4
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT2G37620 95.5 1.8e-213 738.4
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT2G37620 94.4 1.1e-212 735.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT2G37620 95.8 1.5e-212 735.3
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT2G37620 90.3 1.5e-209 725.3
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.0e-200 693.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT5G59370 96.8 2.7e-214 741.1
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT5G59370 97.1 4.7e-214 740.3
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT5G59370 96.8 1.8e-213 738.4
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT5G59370 94.4 2.4e-210 728.0
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT5G59370 93.9 4.1e-210 727.2
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT5G59370 90.8 1.2e-209 725.7
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 6.7e-197 683.3
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G46520 97.1 1.2e-214 742.3
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G46520 97.4 2.1e-214 741.5
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G46520 97.1 7.9e-214 739.6
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G46520 94.7 1.1e-210 729.2
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G46520 94.2 1.8e-210 728.4
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G46520 91.0 5.3e-210 726.9
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.0e-197 684.5
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G12110 97.1 2.5e-215 744.6
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G12110 96.8 9.4e-215 742.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G12110 96.0 2.3e-213 738.0
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G12110 95.5 6.7e-213 736.5
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G12110 95.2 8.8e-213 736.1
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G12110 91.3 3.7e-211 730.7
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 1.9e-199 691.8
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT3G18780 93.1 3.5e-209 724.2
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT3G18780 92.6 3.5e-209 724.2
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 2.9e-208 721.1
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT3G18780 92.3 3.8e-208 720.7
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT3G18780 86.8 2.0e-204 708.4
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.4e-196 680.6
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT1G49240 93.4 1.2e-209 725.7
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT1G49240 92.9 1.2e-209 725.7
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 4.5e-209 723.8
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.0e-208 722.6
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT1G49240 92.6 1.3e-208 722.2
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT1G49240 87.1 6.7e-205 709.9
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.5e-196 682.2
Chy02g01031 . 19 396 Cytoskeleton Gene Families AT5G09810 98.4 5.9e-217 750.0
Chy04g01779 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.7e-214 740.3
Chy08g00757 . 1 378 Cytoskeleton Gene Families AT5G09810 96.6 4.7e-214 740.3
Chy01g00298 . 1 378 Cytoskeleton Gene Families AT5G09810 95.8 1.4e-213 738.8
Chy09g00409 CCT 1 378 Cytoskeleton Gene Families AT5G09810 95.5 4.4e-212 733.8
Chy10g00547 . 1 402 Cytoskeleton Gene Families AT5G09810 90.3 2.6e-209 724.5
Chy11g00060 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 2.8e-203 704.5
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT2G19760 76.5 1.3e-57 219.2
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT2G19760 76.1 1.2e-55 212.6
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT2G19760 73.5 2.9e-54 208.0
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT4G29350 78.0 7.4e-58 219.9
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT4G29350 75.0 4.5e-55 210.7
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT4G29350 74.6 2.2e-54 208.4
Chy05g01410 . 1 134 Cytoskeleton Gene Families AT4G29340 85.2 1.4e-64 242.3
Chy05g01409 . 1 132 Cytoskeleton Gene Families AT4G29340 70.4 8.6e-54 206.5
Chy04g00956 . 1 132 Cytoskeleton Gene Families AT4G29340 68.9 8.1e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01031 Chy_Chr02 FPKM 16.19256 17.512186 12.981467 13.18705 10.813511 10.087931 11.712288 9.614358 9.821962 9.072051