Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01040 ATGGTGAAAGATGACTTATGTATTACAATTCCCACCGATTTCAGGTGTCCCATCTCTTTAGACGTCATGAAATCCCCTGTAAGTTTATGTACCGGAGTGACTTACGATCGTTCCAGTATTCAGAAATGGCTTGATAATGGAAACAATACTTGTCCTGCCACCATGCAGGTCCTTCAAACCAAGGACTTTGTTCCTAACCACAATCTCCACCGTCTCATTCAGATTTGGTCCGATTCCCTTCACCAACGCCTTCACTCCCCTTTTTCTGACTCTTCTCTCTCCTCCGATCATCTTCTCCGCCTCATCAACCGTATGGATGACCATCAATCACGTGCTGATTCTCTTCCTCGCCTTCTCTCTTTTGCTTCTGAATCCCTCGACAATCGGAGGCTTCTCTCTGGAATTGACGGACTCCTCCCGCTACTTGTCGATCTTCTTTGCAATGTCCATGCCGGTGATTTGCTTCACCAAGCTGTCAGGCTCTTGCATTTGATTCGGACTGAGATTGGAGATAAGGAGAGGTTTGTCAAGACGATGTTGAATAGCGATCGTAATTGTATTTCGTCTCTGCTTTTGATTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTGCTGGAATATCTCGCAATCGACGCCGAAGCGAAGATTGTAATTGCAGAAACAGATGGATTGATGCAAGAATTACTCAAATTAATCAATTCTGAAAACGACACAACCCTAATTGAATCTGTACTATCATGCCTAATTTCGATTTCAATGCCGAAACGGATCAAAATCAAATTAGTCCAACTCGGAGTGATAAAATCAGTAACGAAGCTTCTCTCTGAGTCCAACTCGAGTTCAAGCATTTCGATAACGGAGAAGGTTCTGAAAGTTCTAGAAACGGCATCGACGGTGAGAGAAGGAAGAACAGAGATCGGAGAAGACTCCGTATGCGTAGCGGCGATAGTACAGAAAGTGTTGAAGATATCGAACGCAGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGGAGAGGCGTTGACGAAGGCGAATGGATTAACGAAGATATTGCTGTTAATGCAGAGCAATTGCTCACCGCCGGTACGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGAATCAATTCGAAATCGTGCCTATCGAGCTACGATACAAAAACTACACATATCATGCCATGTTAA 1227 44.99 MVKDDLCITIPTDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKDFVPNHNLHRLIQIWSDSLHQRLHSPFSDSSLSSDHLLRLINRMDDHQSRADSLPRLLSFASESLDNRRLLSGIDGLLPLLVDLLCNVHAGDLLHQAVRLLHLIRTEIGDKERFVKTMLNSDRNCISSLLLILRKGTVELKICSANLLEYLAIDAEAKIVIAETDGLMQELLKLINSENDTTLIESVLSCLISISMPKRIKIKLVQLGVIKSVTKLLSESNSSSSISITEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKISNAATEHAVTTLWSVCYLFRDEKAGEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC* 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7116973 7118199 + Chy2G033070.1 Chy02g01040 220488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01040 408 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Chy02g01040 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Chy02g01040 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Chy02g01040 408 Gene3D - 161 397 IPR011989 -
Chy02g01040 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
Chy02g01040 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Chy02g01040 408 SUPERFAMILY ARM repeat 98 390 IPR016024 -
Chy02g01040 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 87 IPR013083 -
Chy02g01040 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Chy02g01040 408 SUPERFAMILY RING/U-box 6 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01040 Chy-Chr2:7116973 Chy05g00202 Chy-Chr5:1692654 3.46E-39 dispersed
Chy11g00038 Chy-Chr11:452063 Chy02g01040 Chy-Chr2:7116973 3.24E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01040 - - csv:101207530 717.998