Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01042 ATGCTGAGCTCTGATGGAGATGCAGATGTTTTCTTTGACTCAGAAGATTACTTGCCATTAGAGGAGTCTTTGGTAGCTGAAGAAGCTGATTTCAGCAAGTTAGGATATGAAATATGGATGAGTGAACCTCAGAGCATTAAGAAGAGAAGGGAACGGTTTCTTCAAGAAGTTGGTTTTGTTGAATTTGCATCTTCTAGTACTTGTGCACAGGATTCAGAGATTGAATCTAGTTGTTCATCAGAGAGGATGGAATTGGAGAGACTTACAGAGTGTAGTGGAGCTGTCTCAAGCTCTGACTATACACCGAGCTGTAATGTGGAAGAAAATGATTTCGTAGTATGCCACAATGAGATGCAAAGTGCTGAATTTGACAACGAGGCAACCAATCGACTGTCTTCTGTTTCTGACTCCAGCTTTCGACGGCCCCAAGGTGAAGCTAATGTTGAAGCTTGCCAGGATGTTGATGTGGGTAAAAAGAAAATATTGACATGGTGGAAATCATTTAAGAACAAAGCAGCAAGACGAAGGAGTAGAGATTTTTCTGGGGAATCGGAATTGAATTCACCAAAATCCCAAAGTTGCAGAATGAAGGTGTACCAACACAAAAAGGGGTGTTCAGAATTTAGTGCATTGTATATGAGACAGCACATTTGTGCACACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGATGGTAAGTATTTAGCAAGCGGAGGAGAAGATGGAGTTGTACGCATTTGGCGTGTAACGTATGCACATGCTTCTAGTGAGTTTTTAGCAGATGACGGAAATTATAATACCAAACCGAAAGAAGGGAAGTCTAGTTTCAGTAGCAAACCGTTGAGATTTGCCACTGTTGTCATTCCTGAAAAGGTTTTTCAGATCGATGAGTTGCCAATACAAGAACTCCATGGACATTCAAATGATATCTTGGACATTGCTTGGTCTACTTCAAACTGTCTTTTGTCATCCTCAAAGGATAAAACCGTACGCTTATGGCAAGTCAGTTCTGACCAATGTCTCAATGTTTTCCACCATAAAAATTATGTGACTTGTGTCCAATTCAATCCAAGGGATGAAAATTTTTTCGTCAGCGGCTCAATTGATGGCAAAATCCGGATATGGGGTGTCAAGAAGCAGCGTGTAGTTGATTGGGCCGATATCCGAGATGTAATTACCGCCGTATCTTATCGACCAGATGGGAAGGGATTTGCTGTTGGTTCTATTACTGGCACTTGCCGTTTCTATGAAACATCAGGTGATTATCTTCATCTGAGTGCACAGATCAATGTTCAAGGTAGAAAAAAAGCCTCGGGCAAAAGGATCACTGGCATTCAGTTTTTCCGGGAAAATTCTCAAAGAGTGATGATAACTTCAGAAGACTCTAAAGTACGGATATTCGAAGGAACGGAAATCGTCCACAAATACAAAGGTCTACCGAAGTCGGGGAGTCAGATGTCTGCTTCCTTTACGAAAAATGGAAAACATATAGTATCGGTCGGAGAGGACTCTCGTGTATATATGTGGAACTACGATAGCCTTTGCCTTCCGTCGTCAAAAGAAACAAAATCTCAGCAGTCTTGTGAGCATTTCTTTTCTGATGGTGTGTCTGTTGCTATACCATGGTCTGGGGTTGGAACTGAATCAAACTGCTTCAGTAACAACCAACCACAGTTTTCACATAGAAAGAATTACCAAAGGGCTGCTTCTTGGACAAGAGATACGGACCGGTTTTCACTCAGTAATTGGTTCTCTGCTGATGGTTTGTTCCGAGGATCTGCAACATGGCCAGAAGAGAGACTGCCTCTCTGGGATTTACCAATTACTGAAGATGAAAATGGAAACCTACAACACCGTGATTGCCATCAAAAGAAACTAAATAGTCATCGTGATGCCCACAACGATGGATCTCAACTTGAAACATGGGGCCTTGTGATGGTCGTTGCTGGATTAGATGGAACTATAAAGACATTCCACAACTATGGATTGCCTATCAAGCTTTAG 2007 41.75 MLSSDGDADVFFDSEDYLPLEESLVAEEADFSKLGYEIWMSEPQSIKKRRERFLQEVGFVEFASSSTCAQDSEIESSCSSERMELERLTECSGAVSSSDYTPSCNVEENDFVVCHNEMQSAEFDNEATNRLSSVSDSSFRRPQGEANVEACQDVDVGKKKILTWWKSFKNKAARRRSRDFSGESELNSPKSQSCRMKVYQHKKGCSEFSALYMRQHICAHKGLIWTMKFSPDGKYLASGGEDGVVRIWRVTYAHASSEFLADDGNYNTKPKEGKSSFSSKPLRFATVVIPEKVFQIDELPIQELHGHSNDILDIAWSTSNCLLSSSKDKTVRLWQVSSDQCLNVFHHKNYVTCVQFNPRDENFFVSGSIDGKIRIWGVKKQRVVDWADIRDVITAVSYRPDGKGFAVGSITGTCRFYETSGDYLHLSAQINVQGRKKASGKRITGIQFFRENSQRVMITSEDSKVRIFEGTEIVHKYKGLPKSGSQMSASFTKNGKHIVSVGEDSRVYMWNYDSLCLPSSKETKSQQSCEHFFSDGVSVAIPWSGVGTESNCFSNNQPQFSHRKNYQRAASWTRDTDRFSLSNWFSADGLFRGSATWPEERLPLWDLPITEDENGNLQHRDCHQKKLNSHRDAHNDGSQLETWGLVMVVAGLDGTIKTFHNYGLPIKL* 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7144278 7147266 + Chy2G033090.1 Chy02g01042 220490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01042 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Chy02g01042 668 Pfam WD domain, G-beta repeat 300 334 IPR001680 GO:0005515
Chy02g01042 668 Pfam WD domain, G-beta repeat 340 376 IPR001680 GO:0005515
Chy02g01042 668 Pfam WD domain, G-beta repeat 216 248 IPR001680 GO:0005515
Chy02g01042 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 386 IPR001680 GO:0005515
Chy02g01042 668 PANTHER WD REPEAT DOMAIN 44 5 668 IPR040324 -
Chy02g01042 668 SMART WD40_4 297 335 IPR001680 GO:0005515
Chy02g01042 668 SMART WD40_4 623 660 IPR001680 GO:0005515
Chy02g01042 668 SMART WD40_4 338 377 IPR001680 GO:0005515
Chy02g01042 668 SMART WD40_4 379 418 IPR001680 GO:0005515
Chy02g01042 668 SMART WD40_4 210 249 IPR001680 GO:0005515
Chy02g01042 668 SMART WD40_4 429 469 IPR001680 GO:0005515
Chy02g01042 668 SMART WD40_4 470 511 IPR001680 GO:0005515
Chy02g01042 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 379 - -
Chy02g01042 668 SUPERFAMILY WD40 repeat-like 211 658 IPR036322 GO:0005515
Chy02g01042 668 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 338 - -
Chy02g01042 668 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 668 - -
Chy02g01042 668 Gene3D - 203 538 IPR015943 GO:0005515
Chy02g01042 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 344 IPR001680 GO:0005515
Chy02g01042 668 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 258 IPR001680 GO:0005515
Chy02g01042 668 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Chy02g01042 668 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Chy02g01042 668 PRINTS G protein beta WD-40 repeat signature 364 378 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01042 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 1325.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01042 Chy-Chr2:7144278 Chy09g01316 Chy-Chr9:15079458 4.54E-119 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01042 Chy_Chr02 FPKM 35.949276 36.017723 35.938763 34.762642 29.32267 23.21324 28.59199 30.444817 32.10273 34.803497