Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01048 ATGGACCCCCATCACCTCTCAAACCCTCCTCCTCATCTCGATCGCTCCGCCATGGATGACCACCATATCCTTCACCATCATCACCACGTTCATGATCTCGATTCTATTTGGCCGTCGTTTTTGCCTTTTCAACTCTCTGATCATCACGATCAACAACTCCCCACCTCCTCCACCCATTTTGTAATAGGATACAGTACTCCAAGTTCTGGAACAGGTGATGATGAAGAAGAGCCAGAAGAAGAGTTAGGTGCAATGAAGGAGATGATGTATAAGATCGCAGCAATGCAGCCGGTGGACATCGACCCTTCAACCATTCGGAAGCCTAAGCGACGAAACGTGCGGATTAGTGATGACCCCCAAAGCATTGCGGCTCGTCTTCGACGAGAGAGGATTAGCGAAAAGATCAGGATTCTTCAAAGGCTCGTGCCTGGAGGGACAAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTTAAGTTCTTGAAGAGACAAATCCGGTTGCTACAGTCAAGTCAACCGCCGCAACAGCCAAGCACCAGCGGTGGAGCCACCACCGCTGCCGGCGGAGGAGGGTGGCATTTTCCATTCAATAAGGCTAATGGTTCAACCTCCTCGTCCACTTCCATGGAAAATACTCCTGCTATTACACCAACAGGATGGTGA 672 49.85 MDPHHLSNPPPHLDRSAMDDHHILHHHHHVHDLDSIWPSFLPFQLSDHHDQQLPTSSTHFVIGYSTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPSTSGGATTAAGGGGWHFPFNKANGSTSSSTSMENTPAITPTGW* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7186730 7187495 + Chy2G033150.1 Chy02g01048 220496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01048 223 MobiDBLite consensus disorder prediction 200 223 - -
Chy02g01048 223 Gene3D - 118 181 IPR036638 GO:0046983
Chy02g01048 223 CDD bHLH_AtIND_like 116 171 - -
Chy02g01048 223 Pfam Helix-loop-helix DNA-binding domain 124 164 IPR011598 GO:0046983
Chy02g01048 223 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 216 - -
Chy02g01048 223 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 216 IPR045843 GO:0003700|GO:0006355
Chy02g01048 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 115 164 IPR011598 GO:0046983
Chy02g01048 223 MobiDBLite consensus disorder prediction 173 223 - -
Chy02g01048 223 SMART finulus 121 170 IPR011598 GO:0046983
Chy02g01048 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 174 IPR036638 GO:0046983
Chy02g01048 223 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01048 Chy-Chr2:7186730 Chy11g00181 Chy-Chr11:1770895 2.16E-46 dispersed
Chy12g00444 Chy-Chr12:5390189 Chy02g01048 Chy-Chr2:7186730 8.75E-13 dispersed
Chy02g01048 Chy-Chr2:7186730 Chy07g00141 Chy-Chr7:1201275 4.61E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17520 PF00010 HLH 1.30E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01048 - - csv:101222266 410.609