Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01049 ATGAAGGGTGGGACGCTTCAGATCAGCTGGCACGACTCAAAGCCAGTGCTCACTCTTGATTTCCATCCAATTTCAGGTCTCCTCGCAACCGGCGGAGCCGATTTCGATATCAAGCTTTGGTTATTAAATTCAGGGGAAGAACAGAAAAAGGTCCCTGGTGCTACTTATCAAAGCAGCCTTTCTTACCATGGTTCTGCTGTTAATAGCCTTCGTTTCTCACCTTCTGGAGAACAGCTTGCCTCTGGTGCCGATGGAGGCGAGCTTATCATATGGAAAATGCACCATGTGGAAAGTGGCCAGTCTTGGAAGGTCCTCAAGACATTATCATTTCACCGGAAGGATGTGCTGGACCTACAGTGGTCCCATGATGGTGCATATTTAATATCTGGATCCGTAGATAATTCTTGCATCATATGGGATGTAAGCAAAGGATCCGTACAGCAGATTTTAGACGCCCATTTGCACTATGTTCAAGGTGTAGCATTGGACCCACTGGGAAAGTATGCTGCTTCTCTGAGTTCGGATAGAAGTTGCAGAATCTATGCCTATAAACCCCCAACAAAAGCAAAAAACAGTGAGAAAATGACTTATGTTTGCCAGCATGTCATTACTAAGGCAGAAAATGTTGCAGTTGATGATTCTAAGTCTGCCAGAAACCATCTCTTTCATGACGAGACATTGCCATCTTTCTTTCGAAGGTTGGCCTGGTCACCTGATGGATCTTTTCTACTCGTGCCTGCAGGTATTAGTAAAATATCGCCAGCATCTGAACCGGTAAATACGGCCTATATATTTTCAAGAAAGGATCTCTCGAGGCCTGCTATTCAGCTCCCTGGCGCCAGCAAGCCGGTTGTAGCAGTATGCTTTTGTCCAAAGCTTTTTAAACTTAGAGGATTAAATTCAGCTGGGTTCTTTAAGCTTCCGCATCGGGTGATTTTTGCCGTAGCAACTTTAAATTCTTTGTACATATATGACACTGAAAGTGCTGTGCCACTAGCCATCATGGCTGGCCTTCACTATGCTGCCATAACGGATATAGCGTGGTCGGCAGATGCTCATTATTTAGCACTATCTTCTCAAGATGGTTACTGCACTTTGGTAGAATTTGAAAATGACGAACTAGGATTACCATTCGCTCTATCAGTCGATGTAGAAGATCAAATAGGAACAACAACCGATCAGAATACGAGTTTAACAGATGTGACTATAAACGACGACGAAAATAGGAGAATAGAAGCAGAAGGGAAACACGAAGAAAACAAAAGCGTTGAAAAGCCAGAAAACATGGTGATTGAAAAAGCTTCAAGTGGAGACAATCTTGTTGAATCTGACTGCAGAGGACACGAAATTGAAAAGAAGGCAAGTAAACAAGTATCTATAAGCTCTTCTAGCAACTCTGTTAGGCCTGCCAAAAGGCGCATTACACCCATGGCTATTGATCCATGA 1446 43.5 MKGGTLQISWHDSKPVLTLDFHPISGLLATGGADFDIKLWLLNSGEEQKKVPGATYQSSLSYHGSAVNSLRFSPSGEQLASGADGGELIIWKMHHVESGQSWKVLKTLSFHRKDVLDLQWSHDGAYLISGSVDNSCIIWDVSKGSVQQILDAHLHYVQGVALDPLGKYAASLSSDRSCRIYAYKPPTKAKNSEKMTYVCQHVITKAENVAVDDSKSARNHLFHDETLPSFFRRLAWSPDGSFLLVPAGISKISPASEPVNTAYIFSRKDLSRPAIQLPGASKPVVAVCFCPKLFKLRGLNSAGFFKLPHRVIFAVATLNSLYIYDTESAVPLAIMAGLHYAAITDIAWSADAHYLALSSQDGYCTLVEFENDELGLPFALSVDVEDQIGTTTDQNTSLTDVTINDDENRRIEAEGKHEENKSVEKPENMVIEKASSGDNLVESDCRGHEIEKKASKQVSISSSSNSVRPAKRRITPMAIDP* 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7191495 7196396 + Chy2G033160.1 Chy02g01049 220497

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01049 481 Pfam WD domain, G-beta repeat 145 181 IPR001680 GO:0005515
Chy02g01049 481 Pfam WD domain, G-beta repeat 57 92 IPR001680 GO:0005515
Chy02g01049 481 Pfam WD domain, G-beta repeat 102 140 IPR001680 GO:0005515
Chy02g01049 481 Pfam WD domain, G-beta repeat 10 40 IPR001680 GO:0005515
Chy02g01049 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Chy02g01049 481 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 452 IPR045145 GO:0006335
Chy02g01049 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 93 IPR001680 GO:0005515
Chy02g01049 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 145 - -
Chy02g01049 481 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Chy02g01049 481 Gene3D - 4 222 IPR015943 GO:0005515
Chy02g01049 481 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 452 - -
Chy02g01049 481 SMART WD40_4 53 92 IPR001680 GO:0005515
Chy02g01049 481 SMART WD40_4 328 368 IPR001680 GO:0005515
Chy02g01049 481 SMART WD40_4 101 140 IPR001680 GO:0005515
Chy02g01049 481 SMART WD40_4 3 41 IPR001680 GO:0005515
Chy02g01049 481 SMART WD40_4 270 325 IPR001680 GO:0005515
Chy02g01049 481 SMART WD40_4 143 182 IPR001680 GO:0005515
Chy02g01049 481 Gene3D - 223 410 IPR015943 GO:0005515
Chy02g01049 481 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 93 - -
Chy02g01049 481 SUPERFAMILY WD40 repeat-like 5 366 IPR036322 GO:0005515
Chy02g01049 481 MobiDBLite consensus disorder prediction 451 481 - -
Chy02g01049 481 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Chy02g01049 481 MobiDBLite consensus disorder prediction 456 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01049 K10751 CHAF1B; chromatin assembly factor 1 subunit B - csv:101222502 933.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01049 Chy-Chr2:7191495 Chy11g00904 Chy-Chr11:12444230 1.59E-34 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1283 . . . . . . . . . . Cma03g01090 . Car03g00981 . Sed10g0499 . Cpe10g00342 Bhi03g01357 Tan03g1314 Cmetu08g0769 . Hepe04g1117 . . Cla01g01520 . . . . . . . . Cone6ag1289 . Lsi01g01145 . . Cme08g01079 . Blo06g00198 . . . . . . . Cmo03g01076 . . . . . . . . . . . . . . . . . . . . . . Csa06g02786 Chy02g01049 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011096 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01049 Chy_Chr02 FPKM 0.53136 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.126438