Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01062 ATGGCTATAAATTTGTTGAAAACTTTTCCCAAAGCTCAGACCTCCATTACTTCTAAACCTTCAACCTCTCTTTTTTTCACCACTAGAAGCTCCTTCTCCTTCCCCTCATGCCCTCCAGTTGCGTTAGCTATTTGTTCAATGTCTTATGAGAAGGAGCTCGCCGCTGCCAAGAAAGCCGCCTCTCTCGCCGCTCGTCTCTGCCAGGCAATTCTCTTTAAAGTGCAGAAGGCATTGTTGCAATCTGATGTTCAATCCAAATCAGATAGAAGCCCAGTGACTGTAGCTGATTACGGTTCACAGGCGCTGGTTAGTTTTGTACTGGAAAGGGAACTCCCTTCTGAACCTTTTTCACTGGTAGCTGAGGAGGATTCGGGAGATCTCCGAAATGAGAGTGGCCAGGAAACATTACATCGCATTACAGAACTTGTGAATGAAACAATTTCCAGCGAGGGATCGTATGATGCTTCAACCTTAACAGCAGAAGATGTGATTAGGGCTATTGACAATGGGAAATCTGAAGGAGGCCCTATTGGTCGGCATTGGGTTTTGGATCCCATAGATGGGACAAAGGGATTTCTAAGAGGAGACCAATATGCTATTGCATTGGCATTGCTTGATGATGGGAAAGTAGTATTGGGTGTCCTAGCCTGTCCAAATCTTCCCTTGGGACCAATTAATAGCAGTAATCAGCATTCACTTCTTGGAGACGTTGGTTGCCTTTTCTTTTCTACGATTGGTGCGGGAACATATATGCAGTCACTAACTGGTTCTACATTAACAAAGGTGAGCGTCAGTGCTACTGAAAATCCTGAAGAAGCATCTTTCTTTGAATCATATGAAGCTGCTCACTCTCTGCATGATCTTACTAGCTCCATTGCTCAAAATCTTGGTGTTAAAGCGCCACCAGTTAGAATCGACAGTCAAGCAAAATATGGCGCCCTTTCCCGAGGAGATGGAGCCATATACCTTCGTTTTCCTCACAAAGGATACCGTGAAAAGATTTGGGACCATGCTGCTGGATGCATTGTTGTTACAGAAGCTGGTGGAGTTGTTACGGATGCAGCCGGGAATGCACTGGATTTCTCAAAAGGAAGATATTTGGATCTGTACAAGGGTATCATTGTTACGAACCAGAGATTAATGCCATCACTCCTCAAGGCAGTTCAAGAAGCTCTTCAACAGACAGCTTCTTCAACCTTGTGA 1203 44.64 MAINLLKTFPKAQTSITSKPSTSLFFTTRSSFSFPSCPPVALAICSMSYEKELAAAKKAASLAARLCQAILFKVQKALLQSDVQSKSDRSPVTVADYGSQALVSFVLERELPSEPFSLVAEEDSGDLRNESGQETLHRITELVNETISSEGSYDASTLTAEDVIRAIDNGKSEGGPIGRHWVLDPIDGTKGFLRGDQYAIALALLDDGKVVLGVLACPNLPLGPINSSNQHSLLGDVGCLFFSTIGAGTYMQSLTGSTLTKVSVSATENPEEASFFESYEAAHSLHDLTSSIAQNLGVKAPPVRIDSQAKYGALSRGDGAIYLRFPHKGYREKIWDHAAGCIVVTEAGGVVTDAAGNALDFSKGRYLDLYKGIIVTNQRLMPSLLKAVQEALQQTASSTL* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7304866 7307605 + Chy2G033290.1 Chy02g01062 220510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01062 400 Gene3D - 263 394 - -
Chy02g01062 400 CDD PAP_phosphatase 65 390 - -
Chy02g01062 400 ProSitePatterns Inositol monophosphatase family signature 2. 335 349 IPR020550 GO:0046854
Chy02g01062 400 PANTHER PHOSPHATASE 47 395 - -
Chy02g01062 400 Gene3D - 47 262 - -
Chy02g01062 400 Pfam Inositol monophosphatase family 88 392 IPR000760 GO:0046855
Chy02g01062 400 PANTHER BNAA09G06680D PROTEIN 47 395 - -
Chy02g01062 400 ProSitePatterns Inositol monophosphatase family signature 1. 181 194 IPR020583 -
Chy02g01062 400 PRINTS Inositol monophosphatase superfamily signature 332 356 IPR000760 GO:0046855
Chy02g01062 400 PRINTS Inositol monophosphatase superfamily signature 90 110 IPR000760 GO:0046855
Chy02g01062 400 TIGRFAM bisphos_HAL2: 3'(2'),5'-bisphosphate nucleotidase 48 395 IPR006239 GO:0006790|GO:0008441
Chy02g01062 400 SUPERFAMILY Carbohydrate phosphatase 50 392 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01062 K15422 SAL; 3'(2'), 5'-bisphosphate nucleotidase / inositol polyphosphate 1-phosphatase [EC:3.1.3.7 3.1.3.57] - csv:101204881 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00345 Chy-Chr2:2222394 Chy02g01062 Chy-Chr2:7304866 4.54E-40 dispersed
Chy02g01062 Chy-Chr2:7304866 Chy04g00586 Chy-Chr4:6452926 4.55E-86 dispersed
Chy02g01062 Chy-Chr2:7304866 Chy12g00970 Chy-Chr12:15000991 9.26E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1315 . . . Bda10g00403 . . . Bma15g00782 . . Cma03g01102 . Car03g00991 . Sed10g1074 . Cpe10g00329 Bhi03g01336 Tan03g1298 Cmetu08g0340 . Hepe04g1105 . . Cla01g01508 Cam01g1576 Cec04g1220 Cco04g1288 Clacu01g1601 Cmu01g1489 Cre04g1168 . . Cone6ag1270 . Lsi01g01160 . . Cme08g01092 . . . . Bpe10g00263 . . . . Cmo03g01085 . . . . . . . . . . . . . . . . . . . . . . Csa06g02772 Chy02g01062 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009021 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01062 Chy_Chr02 FPKM 56.031612 57.662827 61.312511 65.938988 70.58268 55.595222 66.020164 45.582302 51.489498 46.453247