Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01137 ATGGAGTCAATGAAATCGCTATCTCCTGTGGAATCTAACTTAGATTCCTCTAATGGAATCCATTCAACTTCGATGTTTTCGGATTCACCCCCGCTTATATCTGTTTATACAGATGTGGATGTTGTACCTGAGCATAAAAATGCTGAGCTCCATCAATCAATGCTGAATCTAGAAGGTGAAATTGAGCAATTGCGATTGAAGCTGAGGGCATCGGACGAAAAACGGAGAGAAGCATTGAATAAGATTTTAGATATTAAAGGCAGCATTCGTGTGTTTTGTCGAGTTCGCCCGTTCCTACTGACAGATCGGAGAAGAATTTGTGATCCCATTTTGGTGGAACAAGATAAGGTTAGGGTTCGGTCCTCAGGAACTAAAAAGGAATTTGAATTTGATAAGATTTTCTCCAAAGAAACATCCCAAGAGGAAATCTACTCTGAGGTGGAACCAATAATCCAATCTGCTCTCGACGGTCGAAATGTTTGTATAATAGCTTATGGTCAAACGGGTACCGGCAAGACATATACCATGGATGGGAAAATGGAGCAGCCAGGTATAGTTCCCCGTGCTCTCGAGATGCTCTTTCGTCAAACTTCTGTTGGTGCTTCATCTACTGTGACATTTTCCATGAGTATGTTGGAGGTTTACATGGGAAGTCTTAGAGATCTGCTGGCCCCAAAAGCAGCCTCAAGAATGTATGAAAAATGCAATCTCAACATTCAAACAGATCAAAAAGGATTCGTTGAGATCGAGGGCCTAACAGAAGTCCCGATTCCTGACTTTGAAAAAGCCAGATGGTGGTATAATAAGGGAAGGCGAGTCCGATCTACTTCGTGGACTAATGTGAATGAAACATCTAGCCGATCCCACTGCTTAACGAAGGTCACCATTTATCGCTGCGTGGATGCTTCGAAAGCTAAAACCGAAGTAAGCAAACTATGGATGGTGGATCTTGGGGGAAGTGAGAGATTGTTGAAAACTGGTGCTTGTGGTCTAACTCTCGACGAGGGAAGAGCGATAAATCTTTCGCTTTCAGCTTTGGGTGATGTTATTGCAGCTTTAAGGAGAAAGAGAGGTCATGTCCCTTACAGAAATAGCAAGCTAACTCAAATACTCAAAGATTCCTTAGGTGATGGTTCAAAGGTGTTAATGCTTGTGCATTTAAGTCCATGTGAAGAAGATGTTGCAGAGACGATCTGCTCATTAAGTTTTGCGAAGAGAGCACGAGCAATCGAGACAAGTCGAGAACTACAGGAGGACTTGAAGAAACAAAGAGAGAAAAGGATTGCAGAGTTGGATGAAAGCATGAAGGAAGCTCAAGAGGAATGCCAAAAAGTGAAGAACCAAATACAGAAGGCTGAGTTTCTATTATGTGAAAACAAGAAACTATTTTCCAGCGATCGTAATCCACGTGTCGAAACTCCAGAAGCAAACCATATGGTGCCCGTGGAAGATCGGAAAGAAGTCACTAGCACTCCAAGAAAATCTAAAGTTCCAAGTAAAAGTATCATTTCCAATTCATTGCCGCGTTTCATGACTTCTACAATGGCGAGTCGCCAACGACAAAGTGCAGCGGAAAACAAAATAGTGATGGGGAGGGTGAAAAGTTTGAGATTTGGAGCAAGAAGCTCTGTCCAATTCTCGAGTTCCCAATCCATAAGTTACTCAGATTTTCGTATAAGAGCAAGCCTACAATTATCTAACAAGAAATCGCGGTATGTAGAACCCGACACCCTCTCAACCGAAACTCCTCAAGTCAATGGCTCAGAACCGAAAAAGGATCCATTGCCATTGTCATTGCCATTGCCATTGCCACAAAGCAAAATGGTAACTTCATCTGATTCAAACTTGAGAGTTACGCTTTCTCGTCACCGAAGAAGGATGTCTGATCTAATCTAA 1896 42.35 MESMKSLSPVESNLDSSNGIHSTSMFSDSPPLISVYTDVDVVPEHKNAELHQSMLNLEGEIEQLRLKLRASDEKRREALNKILDIKGSIRVFCRVRPFLLTDRRRICDPILVEQDKVRVRSSGTKKEFEFDKIFSKETSQEEIYSEVEPIIQSALDGRNVCIIAYGQTGTGKTYTMDGKMEQPGIVPRALEMLFRQTSVGASSTVTFSMSMLEVYMGSLRDLLAPKAASRMYEKCNLNIQTDQKGFVEIEGLTEVPIPDFEKARWWYNKGRRVRSTSWTNVNETSSRSHCLTKVTIYRCVDASKAKTEVSKLWMVDLGGSERLLKTGACGLTLDEGRAINLSLSALGDVIAALRRKRGHVPYRNSKLTQILKDSLGDGSKVLMLVHLSPCEEDVAETICSLSFAKRARAIETSRELQEDLKKQREKRIAELDESMKEAQEECQKVKNQIQKAEFLLCENKKLFSSDRNPRVETPEANHMVPVEDRKEVTSTPRKSKVPSKSIISNSLPRFMTSTMASRQRQSAAENKIVMGRVKSLRFGARSSVQFSSSQSISYSDFRIRASLQLSNKKSRYVEPDTLSTETPQVNGSEPKKDPLPLSLPLPLPQSKMVTSSDSNLRVTLSRHRRRMSDLI* 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8046142 8049227 - Chy2G034040.1 Chy02g01137 220585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01137 631 Coils Coil 406 455 - -
Chy02g01137 631 Coils Coil 47 81 - -
Chy02g01137 631 PANTHER KINESIN-LIKE PROTEIN KLP-3 3 626 - -
Chy02g01137 631 ProSiteProfiles Kinesin motor domain profile. 88 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy02g01137 631 MobiDBLite consensus disorder prediction 573 587 - -
Chy02g01137 631 SMART kinesin_4 86 418 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy02g01137 631 MobiDBLite consensus disorder prediction 1 23 - -
Chy02g01137 631 MobiDBLite consensus disorder prediction 573 631 - -
Chy02g01137 631 MobiDBLite consensus disorder prediction 466 493 - -
Chy02g01137 631 Pfam Kinesin motor domain 114 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy02g01137 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 450 IPR027417 -
Chy02g01137 631 PANTHER KINESIN-LIKE PROTEIN KIN-14D ISOFORM X1 3 626 - -
Chy02g01137 631 MobiDBLite consensus disorder prediction 466 503 - -
Chy02g01137 631 Gene3D Kinesin motor domain 83 456 IPR036961 -
Chy02g01137 631 PRINTS Kinesin heavy chain signature 311 329 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy02g01137 631 PRINTS Kinesin heavy chain signature 279 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy02g01137 631 PRINTS Kinesin heavy chain signature 360 381 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Chy02g01137 631 PRINTS Kinesin heavy chain signature 157 178 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01137 - - - csv:101217330 1177.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01137 Chy-Chr2:8046142 Chy05g01112 Chy-Chr5:15669468 3.12E-83 dispersed
Chy03g01375 Chy-Chr3:16585558 Chy02g01137 Chy-Chr2:8046142 1.17E-26 dispersed
Chy09g01040 Chy-Chr9:12894609 Chy02g01137 Chy-Chr2:8046142 1.86E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1360 . . Bda04g00387 Bda10g00408 . . Bma09g00443 Bma15g00774 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo05g00524 Blo06g00185 . . Bpe10g00268 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g01137 .
Vvi14g428 . . . . . . . . . . . . . . . . . Bhi02g01994 . . . Hepe09g0753 . . . . . . . . . . Cone3ag0775 . . Lsi06g00195 . Chy02g01137 . Blo17g00601 . . Bda08g01028 . . . . . . . . . . . . . . . . . . . . Cla03g01570 Cam03g1649 Cec03g1700 Cco03g1694 Clacu03g1674 Cmu03g2226 Cre03g1903 . Csa01g02845 . Cme02g00160
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008630 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 2 1 1 2 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01137 Chy_Chr02 FPKM 30.39831 30.564188 29.685162 31.611021 36.053646 33.749973 39.109871 26.848059 26.493982 28.364933