Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01148 ATGGATCCTCGCAACGACGCCGTTTTCCGCGACGAAGACCTCGAAGACGACGAGGAATCACTCGACGACGACGACGACGACGAGGAAGAGGAAGAATTGAACGACGAACCTTCTCCTTCCACATCCTCCGCCGGCCCCCTTCCTGTCACTTCCGTATCCGCTACCGTCACCATCGCCACTCCCCCCGCTGTCTCCGTTGTTCCTCCTCCTTCGATCGTCTCAATCTCCTCCGCCGATCTGATTCGCCAGCGTCTCGAAACTGCTACTGCTGAGCCTTTGACCTTACCGGGAGAGAAGAAGCCTTTGGATGAGTCCAGGAAGTTGTTTCAACGTCTTTGGACCGATGAGGATGAGATCGAGCTGTTGCAAGGGTTTTTAGATTATACGATGCAGCGTGGTACGACTCATCATCATCAGAATGATACGGCCTTGTTTTATGACCAGATCAAGTCTAAATTACAGTTGGATTTTAACAAGAATCAGCTTGTGGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGTAACGTTATTGGTAAGATTAGCTCTGGTAAGGACTTTAATTTTAAAAGCCCTCACGATCAAGCCACGTTTGAGATCTCTCGCAAGATCTGGAGTAATACTGGCCGAATTGGAGTTGACGACAACGCTTTGGATGACGATGAGCCTGCTCCGACTCCTTATGCTACCTACATGGATCATAGAAACGAAGAAATGATGGCGAATTGTGCAGAGAAGAAACCGACGCCTACTCCGAAATCGCGGAAGCGTTCAAGGCCTGGATCGGGAATTAGAATGGAAGCGCCACGTTCTTCCCATGAGAATTTGAATAAAGAGAAGAATAGTATCTACCACCACCACCACAACCACAACAACAACAACAACAACGCCAACAACAACGAAAATGTCAATAACGTAGCTGTAGCTGGCTTGATCGAGGAGACGGTGAAGAGCTGCTTGTCGCCATTGTTTAAGGAATTGTTGAATACTTCCATGGGAGGTGGGCTCTGTGGAGGCAGAGGGTTTAGTGGATTAGCTTTGCATCCAATTCCATTGAGCTTCAGTGGAGCTTCCTTGAATTTCAGTGGTGGATTAGAAATGGGGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCAAAGAGGTTGGAGTTGGTTCAGGAGCAAATTAAGACGGCATTAGAAGATTTGAGGAAAGTCTAA 1212 47.77 MDPRNDAVFRDEDLEDDEESLDDDDDDEEEEELNDEPSPSTSSAGPLPVTSVSATVTIATPPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLPGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAPTPYATYMDHRNEEMMANCAEKKPTPTPKSRKRSRPGSGIRMEAPRSSHENLNKEKNSIYHHHHNHNNNNNNANNNENVNNVAVAGLIEETVKSCLSPLFKELLNTSMGGGLCGGRGFSGLALHPIPLSFSGASLNFSGGLEMGDERWRKQQILELEVYSKRLELVQEQIKTALEDLRKV* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8192994 8194205 + Chy2G034150.1 Chy02g01148 220596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01148 403 PANTHER BNAANNG10740D PROTEIN-RELATED 2 402 IPR007592 GO:0006355
Chy02g01148 403 Coils Coil 379 399 - -
Chy02g01148 403 MobiDBLite consensus disorder prediction 11 36 - -
Chy02g01148 403 MobiDBLite consensus disorder prediction 242 274 - -
Chy02g01148 403 Pfam Protein of unknown function, DUF573 109 205 IPR007592 GO:0006355
Chy02g01148 403 PANTHER BNAANNG10740D PROTEIN 2 402 - -
Chy02g01148 403 MobiDBLite consensus disorder prediction 1 49 - -
Chy02g01148 403 Coils Coil 159 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01148 - - - csv:101219457 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00404 Chy-Chr1:2864353 Chy02g01148 Chy-Chr2:8192994 2.64E-19 dispersed
Chy02g00365 Chy-Chr2:2342305 Chy02g01148 Chy-Chr2:8192994 1.96E-27 dispersed
Chy02g01148 Chy-Chr2:8192994 Chy05g01177 Chy-Chr5:16259777 3.59E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01148 . 50 221 GeBP Transcription Factor Family AT3G04930 60.3 5.7e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17526 PF04504 DUF573 1.40E-34 CL0123 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01148 Chy_Chr02 FPKM 7.421094 8.557647 1.822759 1.23243 46.287502 41.325947 42.76474 6.108608 5.320289 4.779893