Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01185 ATGTTAATCAGTGAACGACACCGTCCTGGTCCGGTGGTTCACATCACTCCATTGACTATACCGGAGGAACCTACGGCAACCGAGACGCGGTTTCCTTATCCTTTGAGTGGAATCTCGGTGAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTTCAGGAAGCTTTAGCGGCACTTCAGCGGTATACGAATGAGTCGGAGATTGAGTCTGATTCGGAGTTGTCTGGACGGGAAGCGGACGTTCCGTTGAATGCTTATTCGTGTGATCATTTTCGGATTTTCGAGTTCAAGGTGAGGAAGTGTACTCGTGGACGTTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCTGGCGAGAAGGCTCGCCGGAGAGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGTCCTGATTTTCGTAAAGGTAGCTGTAAGAAAGGGGATTCATGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAAGATGGAACCAACTGTAGAAGGAGAGTCTGTTTCTTCGCTCACACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGTCCGAGAAGCGCGAATTCGCCTGACTCGTATGATGAATCTCCTCTTCGGCAGTCTGTGGATGGATCCTGTTCTAAAACGCTGCCGTTTCTGTCCTCTCCTGTGTCTGTTTCACCGACAGCGACTCCGGTGGACTCACCCCCGTTATCCCCCATGACTCGTTCGCTCGGCCGGTCACTTGGCTCCAGTTCCATCAACGAAATGGTCGCATCCCTACGGAACTTACATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGCAGCCTTCCAACAACTCCAACTCGGGCTCCAACTGGCCATGGAGTTGGACTGCTCGATTTCACAGAGCATGGATTCGAGGAGGAACCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCGGATGTTGAATGGGTATCAGAGCTAGTGAAGTGA 1149 51.0 MLISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDESPLRQSVDGSCSKTLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSSSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK* 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8505957 8507105 - Chy2G034520.1 Chy02g01185 220633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01185 382 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 8 382 - -
Chy02g01185 382 MobiDBLite consensus disorder prediction 197 223 - -
Chy02g01185 382 PANTHER UNKEMPT FAMILY MEMBER 8 382 IPR045234 -
Chy02g01185 382 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 159 IPR000571 GO:0046872
Chy02g01185 382 SMART c3hfinal6 134 160 IPR000571 GO:0046872
Chy02g01185 382 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Chy02g01185 382 SUPERFAMILY CCCH zinc finger 133 163 IPR036855 GO:0046872
Chy02g01185 382 MobiDBLite consensus disorder prediction 236 257 - -
Chy02g01185 382 ProSiteProfiles Zinc finger C3H1-type profile. 135 161 IPR000571 GO:0046872
Chy02g01185 382 Gene3D - 134 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01185 Chy-Chr2:8505957 Chy03g01626 Chy-Chr3:18186541 6.37E-86 dispersed
Chy01g00319 Chy-Chr1:2293137 Chy02g01185 Chy-Chr2:8505957 3.45E-66 transposed
Chy05g01423 Chy-Chr5:18195541 Chy02g01185 Chy-Chr2:8505957 1.03E-150 transposed
Chy02g01185 Chy-Chr2:8505957 Chy07g00223 Chy-Chr7:1831517 3.17E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17529 PF00642 zf-CCCH 1.70E-06 CL0537 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01185 - - csv:101204432 773.467