Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01258 ATGGCGGATAAGAAAGGAATGGAACAGCTTGTTTTACGGATTTTGGAAGGTGATGAAGGAGTTCGTGGAAGTAGTAAAGATCTTAATAAACCCTCTGTTGGTTCTTTTCCTGATTTTGATCTAAAAGAAACTCGGAGTTTTAGGTGCACGATTCCACAATCCGTGGTTGGGAGTTCTCCTTCACACGAGATTTCCAGAATGACTCCTCATAAACCTCCAAAAATTCCAGGCGAAACGGTGACACGGCGTGCATCATTTGCTTGTTCGTCGTTTACGAAGCCAAAGTCGAGGCTAATAGAGCCTCCTTGTCCTGATGGTGCAAGTTTAGCAGAAGAAAAGGCGTTAGCAAAATCTACATTGTACAGCTCTTCTAAGGTGGACTCTCCAGCTAAGATAACCACTGTGACTAGTCCTAAAGAAGCTTTGAAGGCAACCCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGGAATGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAAATCTGGGAAGAGATTGAAGAAAACAGTTATAGTGGAATGGGTTGCATTTTTGTGTTTAACAGGGTGTTTGATTGCTAGCTTAACTATAGAGACGTTGGTGACCAAAGAGATTTGGGGATTAGGACTGTGGAAATGGTGTGTTCTTGTATTAGTTATTTTCTGTGGTCGTTTGTTTTCGCAATGGTTTATCAATTGTCTGGTTTTCTTGATTGAAAGAAACTTTCTACTCAAAAGAAAGGTTCTTTATTTTGTCTATGGGCTGAGGAAGAGTGTTATAATTTTTATTTGGCTGGCTTTAGTTCTTCTTGCCTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGGAAGGCAACAAGATTCTGAATTATGTTACACGAGCTCTTGGTGCTTCTCTAATTGGAGCAGGACTATGGCTGGTTAAAACTTTGTTGGTGAAGATACTCGCTGCTTCTTTTCAATGCACTAGATTCTTTGATCGGATTCAAGAATCGATCTTCCATCAATATATACTACGCATTTTATCAGGACCTCCGCTCATGGAAATGGCTGAGAGGGTCGGGAGAGCGGCAAGCACAGGACAGTTGAGTTTCAAGCATTTGAAGAAAGAAAGTGATGATGGGAATGAAGGGAAGGAAGAGGTTATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACCATGAGAGGGCTAATCAATGTTATAAGGGGTTCAGGATTGTCCACCATCTCTAATACAATAGAGAATTTTAAAGAGGAAGAGGTTGAGCAAAAGGATAAGGAGATTAACAGTGAATGGGAAGCAAGGGCTGCAGCTTACCAGATTTTCCGAAACGTTGCAAAACCGGGTAGCAAGTATATTGATGAAGAGGACCTCTTTCGTTTTATGAGTAAAGAGGAAATTGATAATGTGCTGCCGTTGTTTGAAGGAGGAGCTGAAACTGGGAAGATAAAGAGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACGTCGAACGCAAGTCGTTAGCTCACTCATTGAATGATACCAAGACTGCCATAGAGGAGCTAAACAAGCTTTCATCTGCAGTTATACTAATTGTGATCATCATTGAATGGCTACTTCTGATGGGTTTCTTAACTACGCAAGTACTCGTCTTCATTTCATCACAGATTCTATTGGTGGTTTTCATGTTCGGCAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTCGTGATGCATCCATTCGATGTTGGGGATCGTTGTGTCGTAGATGGTGTCCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATCTTCTTGAGATATGATAATGAGAAGATCTTCTATCCAAATTCTGTTCTAGCCACCAAACCCATTAGTAACTACTACAGGAGCCCCGAAATGAGCGACTCGATCGATTTTTCCGTAGACTTCTCCACCTCAATAGAAAGCATTGGAGCACTAAAAGCAAGAATAAAAACATACTTAGAAAGCAAACCGCAGTTCTGGCGACCGAACTACAGTGTCGTAGTGAAAGAAATCGAGAATGTCGACAAAATGAAACTAGCTCTATGTGTTAATCACACCATAAACTTTCAGAACTACGGTGACAAGAGCAATCGTAGATCGGATTTGGTGTTGGAGCTGAAGAAAATTTTCGAAGAACTCGGTATCAAATACCATCTGTTGCCTCAAGAAGTTCAGCTCAACTATGTGAGTTCAGCAGCACCCTCTCAAAGATGA 2289 40.67 MADKKGMEQLVLRILEGDEGVRGSSKDLNKPSVGSFPDFDLKETRSFRCTIPQSVVGSSPSHEISRMTPHKPPKIPGETVTRRASFACSSFTKPKSRLIEPPCPDGASLAEEKALAKSTLYSSSKVDSPAKITTVTSPKEALKATPITPKTPLIGTTGNEEEDDEEVYKTAELKVKEKSGKRLKKTVIVEWVAFLCLTGCLIASLTIETLVTKEIWGLGLWKWCVLVLVIFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLALVLLAWGLLFDQSSKRSKEGNKILNYVTRALGASLIGAGLWLVKTLLVKILAASFQCTRFFDRIQESIFHQYILRILSGPPLMEMAERVGRAASTGQLSFKHLKKESDDGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRGSGLSTISNTIENFKEEEVEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEEDLFRFMSKEEIDNVLPLFEGGAETGKIKRKTLKNWLVNVYVERKSLAHSLNDTKTAIEELNKLSSAVILIVIIIEWLLLMGFLTTQVLVFISSQILLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSIDFSVDFSTSIESIGALKARIKTYLESKPQFWRPNYSVVVKEIENVDKMKLALCVNHTINFQNYGDKSNRRSDLVLELKKIFEELGIKYHLLPQEVQLNYVSSAAPSQR* 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9193429 9196055 + Chy2G035250.1 Chy02g01258 220706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01258 762 MobiDBLite consensus disorder prediction 53 78 - -
Chy02g01258 762 Pfam Mechanosensitive ion channel 536 741 IPR006685 GO:0016020|GO:0055085
Chy02g01258 762 PIRSF Memb_At2g17000 20 762 IPR016688 -
Chy02g01258 762 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 21 757 IPR016688 -
Chy02g01258 762 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 21 757 - -
Chy02g01258 762 SUPERFAMILY Sm-like ribonucleoproteins 585 644 IPR010920 -
Chy02g01258 762 Gene3D - 595 644 IPR023408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01258 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101209209 1456.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01258 Chy-Chr2:9193429 Chy07g00275 Chy-Chr7:2150206 0 dispersed
Chy01g00654 Chy-Chr1:4659404 Chy02g01258 Chy-Chr2:9193429 0 transposed
Chy05g00620 Chy-Chr5:7539200 Chy02g01258 Chy-Chr2:9193429 0 transposed
Chy11g01095 Chy-Chr11:15977556 Chy02g01258 Chy-Chr2:9193429 0 transposed
Chy02g01258 Chy-Chr2:9193429 Chy07g00274 Chy-Chr7:2141528 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g105 . . . . Bpe01g00608 . . Bma11g00602 Cmo10g00779 Cmo11g00734 . . . . . Cpe04g01033 . . . . . . . . . . . . . . . . . . . Lsi06g00313 . . Cme02g00283 . Blo14g00566 . . . . . . . . . Cma10g00752 Cma11g00720 Car10g00675 . . . . . . . . . . . . . . . . . . Csa01g02964 Chy02g01258 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy06g00156 . 129 505 Mechanosensitive Ion Channel Family AT4G00290 67.1 5.3e-149 524.6
Chy03g01308 . 10 692 Mechanosensitive Ion Channel Family AT5G10490 57.6 1.1e-197 686.8
Chy06g01600 . 102 761 Mechanosensitive Ion Channel Family AT5G10490 54.4 6.4e-182 634.4
Chy03g01308 . 10 672 Mechanosensitive Ion Channel Family AT1G58200 57.8 2.1e-196 682.6
Chy06g01600 . 82 544 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT1G53470 55.7 9.1e-261 896.7
Chy11g01095 . 43 921 Mechanosensitive Ion Channel Family AT3G14810 53.1 5.9e-249 857.4
Chy11g01095 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.5 1.3e-280 962.6
Chy01g00654 . 59 954 Mechanosensitive Ion Channel Family AT1G78610 55.5 3.4e-273 937.9
Chy11g01095 . 216 921 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-239 824.3
Chy01g00654 . 268 942 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.1e-222 767.7
Chy02g01258 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.2 5.5e-195 677.9
Chy07g00275 . 61 715 Mechanosensitive Ion Channel Family AT5G12080 53.7 1.0e-188 657.1
Chy07g00274 . 73 729 Mechanosensitive Ion Channel Family AT5G12080 52.3 4.9e-175 611.7
Chy07g00276 . 55 702 Mechanosensitive Ion Channel Family AT5G12080 51.2 2.4e-166 582.8
Chy05g00620 . 1 531 Mechanosensitive Ion Channel Family AT5G12080 51.2 3.3e-139 492.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01258 Chy_Chr02 FPKM 0.513173 0.203706 14.27933 15.780719 12.565495 10.258886 12.229181 0.312681 0.315394 0.332391