Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01265 ATGAGCGCCAGAAGTATGTTTCCCTTCACATCAGCTCAGTGGCAAGAGCTTGAACATCAAGCTCTCATCTTCAAATACATGGTTTCTGGCATTCCTATACCTCCTGAACTCCTCTTCAGTATTAAAAGAAGTGCTTTGGATTCTCCTTTCACTTCTAAGCTCTTCCCACACCATCCTCAACCTGGTAATGAGCAACCCTCTCTCTATCTCTTTCTCTCTCTTTCTCTCTCTGAAGTATTTTTGTTTCATGCAGTTGGATGGAACTATTTGCAGATGAGTTTGGGGAGGAAGATAGACCCAGAGCCAGGGAGGTGTAGGAGAACTGATGGGAAAAAATGGAGATGTTCAAAAGAGGCATATCCAGATTCAAAATACTGTGAGAGACACATGCATAGAGGAAAAAATCGTTCAAGAAAGCCTGTGGATGTTTTGAAAACAGCAGCAACAAACGACATAAACCACCTCTCAAATCCAACATTTTCTTCCTTAAACAGCAACTCATCCTTACTCTCCTATCGCCCCTTCCCGGCTCATCAAATATCTTCAACTCCTAATAATGGGAATGGTATATCAATGAAAGACACCAATACCCTCTTGCTTCTTGAACCTGGTTCTTACTCCGACAAAAACCCAGATTACAGAAGTAGGTACACTTGTGGGCTAAAAGAGGAAGTGAATGAGAAAGTTTTCTTCTCACAAGAACCATCTGAAGCTATTGGGAGAGCTGATTTCTCTGCTTCATCCATAGCTAGTTCATTGCAACTGACACCACTAACGATGAGTTCTTCTCAATACCCAAAACAGAACAACAGCTCCTCTTTGCAGAGTGATCAATCCTCATTTTATCAGCTTCAGCAGAGCCTCACAGAACCTTTGAAGCAACAAAAGAGAGACGAATCGCAGAAGACTGTTCATCGATTCTTCGATGAATGGCCTCCAAAAGATAGAGGATCATGGCTTGATTTCGCTGATAAATCATCAAATACTAGCTCAGTTTCCACCACTCGGCTCTCAATTTCCATTCCCACAGCTTCCAACGACTTCCCCATTTTCAGATCCAAAAACCCCTAG 1071 42.39 MSARSMFPFTSAQWQELEHQALIFKYMVSGIPIPPELLFSIKRSALDSPFTSKLFPHHPQPGNEQPSLYLFLSLSLSEVFLFHAVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVDVLKTAATNDINHLSNPTFSSLNSNSSLLSYRPFPAHQISSTPNNGNGISMKDTNTLLLLEPGSYSDKNPDYRSRYTCGLKEEVNEKVFFSQEPSEAIGRADFSASSIASSLQLTPLTMSSSQYPKQNNSSSLQSDQSSFYQLQQSLTEPLKQQKRDESQKTVHRFFDEWPPKDRGSWLDFADKSSNTSSVSTTRLSISIPTASNDFPIFRSKNP* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9244498 9245659 - Chy2G035320.1 Chy02g01265 220713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01265 356 MobiDBLite consensus disorder prediction 290 309 - -
Chy02g01265 356 PANTHER GROWTH-REGULATING FACTOR 6 5 343 - -
Chy02g01265 356 MobiDBLite consensus disorder prediction 260 280 - -
Chy02g01265 356 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy02g01265 356 ProSiteProfiles WRC domain profile. 99 143 IPR014977 -
Chy02g01265 356 MobiDBLite consensus disorder prediction 292 309 - -
Chy02g01265 356 Pfam WRC 100 141 IPR014977 -
Chy02g01265 356 PANTHER - 5 343 IPR031137 GO:0005634|GO:0006351|GO:0032502
Chy02g01265 356 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Chy02g01265 356 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01265 Chy-Chr2:9244498 Chy11g00519 Chy-Chr11:5699392 3.82E-57 dispersed
Chy04g00698 Chy-Chr4:8385309 Chy02g01265 Chy-Chr2:9244498 2.01E-49 transposed
Chy04g01955 Chy-Chr4:25460305 Chy02g01265 Chy-Chr2:9244498 9.84E-37 transposed
Chy02g01265 Chy-Chr2:9244498 Chy05g01469 Chy-Chr5:18431800 7.99E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17535 PF08879 WRC 1.20E-20 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01265 - - csv:101207344 640.188