Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01298 ATGGCGGCAGCTCATTTTACTGGGTCTTTAATTTCCTCGAGGAATTTGCTGCCTTCTTTCAATGGCCTTCGTCCTTCCTCTGTGAAATCATCTCCTTCTGTTGCCCATGTTCGAGTTGGGGGTTTGGCTAACAGATCTTTCACTGGCTTGGTTGTTAGAGCTGCTACTGTGGTTGCTCCAAAGTACACTTCAATCAAGCCATTGGGCGATAGAGTGTTGGTGAAGATAAAGGAAGCTGAAGAGAAGACTGATGGAGGGATTTTGCTTCCGTCAACAGCTCAGACAAGACCCCAAGGAGGGGAGGTAGTTGCGGTTGGTGAAGGCAAGACAATTGGAAATACTAAAGTAGAAGCTAGTGTAAAGACTGGTGCTCAAGTAGTGTACTCTAAGTACGCTGGAACTGAATTAGAGTTTAATGGTTCAAACCATCTTATCCTGAAAGAAGATGATATAGTTGGTATTCTAGAAACCGACGATGCGAAAGATCTTCAGCCCCTAAACGACAGGGTTTTGATCAAGGTAGCTGAGGCTGAGGAAAAAACAGCTGGAGGTTTATTGTTAACAGAGGGATCAAAAGAGAAGCCGTCCATTGGAACGGTGATCGCAGTTGGTCCGGGTCATCTGGACGAAGAAGGCAAAAGGAAACCGCTAACCGTCGCAGTGGGAAACAATGTGATGTACTCGAAATATGCTGGGAATGAATTCAAGGGCAAAGATGGATCTGATTACATTGCTTTGAGGGCATCAGACTTGATTGCAATGGGTTCACACGAGGAAGTTGTGGAAATTAGTAGTTTGGAAAGGGGTCTATTGTCAGAATGCCGCTCTGATTTGGAACCCGAAAGCGATGATGAACCTGTGTTGTTTGCAGCTTCCTTTCAAGAGATGGAAGACAATTTTGTTAAGTATCATACAGCACAATGGGTTCTTTACTCCTTGCTTTTGATTTTGGCGTGGGGGATTGGGTTGTTGATGTTGCTTTATCTACCTGTAAGAAGATACATTCTGCGGAAAGATTTTCAATCGAAGAGGCTTTATCTTACGCCGAATTCAATAGTATACAAGGTTACAAGACCTGTACCTTTTCCATGTTTTGGAGTATTGAAGAAAGAGAAGCATGTTCTGTTGCCTTCAGTGGCAGACATTATAATTGAACAAGGATATTTGGAATCTCTCTATGGAGTTTACTCTATTAGGATAGAGAATGCTGGCGTGAGAAGACCACCTGGTGATGACGTTCATATCCAAGGGATTACAGATCCAATTGCATTTAGAAAGGCTGTTTTAATGCGTCTTGCTGGTATGAGAGATGATGGCAACACTTCTCAGATTTCTACAATTGAAGAAGTTTTAAATACAAAGGCATCCCCATCAAAATCTCCAAAGTATGACCCGTATTTATATTCGGGTGAACAAGTACTTCAAAAAGTAGAGGAGGTTGGAAGTTCTGTGAAGAGAGTTCAAGCTTTGATTGAAGAGCATCAGTCTCAAGTATCTAACATTTTAGATTGA 1512 42.33 MAAAHFTGSLISSRNLLPSFNGLRPSSVKSSPSVAHVRVGGLANRSFTGLVVRAATVVAPKYTSIKPLGDRVLVKIKEAEEKTDGGILLPSTAQTRPQGGEVVAVGEGKTIGNTKVEASVKTGAQVVYSKYAGTELEFNGSNHLILKEDDIVGILETDDAKDLQPLNDRVLIKVAEAEEKTAGGLLLTEGSKEKPSIGTVIAVGPGHLDEEGKRKPLTVAVGNNVMYSKYAGNEFKGKDGSDYIALRASDLIAMGSHEEVVEISSLERGLLSECRSDLEPESDDEPVLFAASFQEMEDNFVKYHTAQWVLYSLLLILAWGIGLLMLLYLPVRRYILRKDFQSKRLYLTPNSIVYKVTRPVPFPCFGVLKKEKHVLLPSVADIIIEQGYLESLYGVYSIRIENAGVRRPPGDDVHIQGITDPIAFRKAVLMRLAGMRDDGNTSQISTIEEVLNTKASPSKSPKYDPYLYSGEQVLQKVEEVGSSVKRVQALIEEHQSQVSNILD* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9522371 9529669 + Chy2G035650.1 Chy02g01298 220746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01298 503 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 PRINTS 10kDa chaperonin signature 65 80 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 PRINTS 10kDa chaperonin signature 121 133 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 PRINTS 10kDa chaperonin signature 142 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 PRINTS 10kDa chaperonin signature 87 108 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 CDD cpn10 163 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 SUPERFAMILY GroES-like 63 156 IPR011032 -
Chy02g01298 503 ProSitePatterns Chaperonins cpn10 signature. 65 89 IPR018369 GO:0005524|GO:0006457
Chy02g01298 503 Hamap Co-chaperonin GroES [groES]. 162 256 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 Pfam Chaperonin 10 Kd subunit 163 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 Pfam Chaperonin 10 Kd subunit 65 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 Gene3D GroES chaperonin 159 263 IPR037124 GO:0006457
Chy02g01298 503 Gene3D GroES chaperonin 58 158 IPR037124 GO:0006457
Chy02g01298 503 ProSitePatterns Chaperonins cpn10 signature. 163 187 IPR018369 GO:0005524|GO:0006457
Chy02g01298 503 SUPERFAMILY GroES-like 162 254 IPR011032 -
Chy02g01298 503 CDD cpn10 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 SMART Cpn10_2 162 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 SMART Cpn10_2 64 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Chy02g01298 503 PANTHER 20 KDA CHAPERONIN, CHLOROPLASTIC 1 254 - -
Chy02g01298 503 Hamap Co-chaperonin GroES [groES]. 64 156 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01298 Chy-Chr2:9522371 Chy11g02016 Chy-Chr11:26011767 2.05E-47 dispersed
Chy11g01938 Chy-Chr11:25442662 Chy02g01298 Chy-Chr2:9522371 3.91E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01298 K04078 - csv:101212396 486.493