Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01404 ATGGAAGACGAAGCTTCCTCCAGTTTACTTTCACATATCAAGAACCCTATCCTAACAGAGGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCCAAGCGCCCGAGATTGGACAATGATCTTAATGATGTTATGGCCGTCGGAAAATTCAAAGGCGTTGTACCGCAACAGAATGGGCGTTGGGGAGCACAAATCTACGCGAATCATCAGAGGATTTGGCTTGGTACCTTCAAAACAGAGAAAGACGCTGCTATGGCTTATGATAGCGCCGCTATCAAGCTTCGTACTAGAGATTCTCACCGGAATTTCCCTTGGACTCGTCGAACAATCGAGGAACCTAATTTTCAAATCAAATTCTCTACAGATGTTGTTTTGAGTATGATCAAAGACGGATCGTATTACTCCAAATTCTCCGCTTATTTACGAACACGATCACAAATTCACGACACGAATATACAGAATCCTAAAAAATTCGACAATGGCGATGGCGATAGCCTTTTCTCTTGTAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGGAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCTGTGAAACATTTCCCGTACATCAGCGAAAGCGCAGAGGAGAACGGCGACGATATCGAAATCGTGTTCTACGATACGTCAATGAAGACATGGAGGTTCCGGTACTGTTATTGGAGGAGTAGCCAGAGTTTCGTGTTTACTAGAGGGTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGATGAGAATGGCGGATCATTGAACTTCATTGACGTAATCTACAAGAAACCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGAAAATATTGGAAAGGGAAAAGCAAAATCAGGAGAAGGATTATGAGAAGATGAAGAAGAAGGAGATTTTGAGCTTTGAATTGAATCCTAATGATAAAAAAGTTGGGGAAAAGCGAATCAGACTATTTGGAGTGAATATTAATTGA 1071 41.92 MEDEASSSLLSHIKNPILTEEVSDSNFTYYAIPEAKRPRLDNDLNDVMAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDVVLSMIKDGSYYSKFSAYLRTRSQIHDTNIQNPKKFDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWRFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGSLNFIDVIYKKPEDDQSESSCLAAEKESVKNEKILEREKQNQEKDYEKMKKKEILSFELNPNDKKVGEKRIRLFGVNIN* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10923539 10924609 + Chy2G036710.1 Chy02g01404 220852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01404 356 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 SMART B3_2 176 275 IPR003340 GO:0003677
Chy02g01404 356 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677
Chy02g01404 356 Gene3D - 165 289 IPR015300 -
Chy02g01404 356 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 16 356 - -
Chy02g01404 356 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
Chy02g01404 356 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 356 IPR044800 GO:0003700
Chy02g01404 356 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Chy02g01404 356 Coils Coil 309 329 - -
Chy02g01404 356 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Chy02g01404 356 CDD B3_DNA 174 265 IPR003340 GO:0003677
Chy02g01404 356 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01404 Chy-Chr2:10923539 Chy02g02107 Chy-Chr2:25405981 1.65E-106 dispersed
Chy02g01404 Chy-Chr2:10923539 Chy09g01354 Chy-Chr9:15378053 1.22E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17543 PF02362 B3 8.50E-27 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01404 K09287 - csv:101219913 709.909