Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01404 ATGGAAGACGAAGCTTCCTCCAGTTTACTTTCACATATCAAGAACCCTATCCTAACAGAGGAAGTTTCAGATTCTAATTTCACATATTATGCCATACCTGAAGCCAAGCGCCCGAGATTGGACAATGATCTTAATGATGTTATGGCCGTCGGAAAATTCAAAGGCGTTGTACCGCAACAGAATGGGCGTTGGGGAGCACAAATCTACGCGAATCATCAGAGGATTTGGCTTGGTACCTTCAAAACAGAGAAAGACGCTGCTATGGCTTATGATAGCGCCGCTATCAAGCTTCGTACTAGAGATTCTCACCGGAATTTCCCTTGGACTCGTCGAACAATCGAGGAACCTAATTTTCAAATCAAATTCTCTACAGATGTTGTTTTGAGTATGATCAAAGACGGATCGTATTACTCCAAATTCTCCGCTTATTTACGAACACGATCACAAATTCACGACACGAATATACAGAATCCTAAAAAATTCGACAATGGCGATGGCGATAGCCTTTTCTCTTGTAGTCATCTATTCCAGAAGGAATTAACACCGAGCGATGTCGGGAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCTGTGAAACATTTCCCGTACATCAGCGAAAGCGCAGAGGAGAACGGCGACGATATCGAAATCGTGTTCTACGATACGTCAATGAAGACATGGAGGTTCCGGTACTGTTATTGGAGGAGTAGCCAGAGTTTCGTGTTTACTAGAGGGTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTGTGGAAGAGATGAGAATGGCGGATCATTGAACTTCATTGACGTAATCTACAAGAAACCGGAGGATGATCAGAGCGAAAGTAGTTGCTTAGCGGCGGAGAAAGAGAGTGTTAAGAATGAGAAAATATTGGAAAGGGAAAAGCAAAATCAGGAGAAGGATTATGAGAAGATGAAGAAGAAGGAGATTTTGAGCTTTGAATTGAATCCTAATGATAAAAAAGTTGGGGAAAAGCGAATCAGACTATTTGGAGTGAATATTAATTGA 1071 41.92 MEDEASSSLLSHIKNPILTEEVSDSNFTYYAIPEAKRPRLDNDLNDVMAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDVVLSMIKDGSYYSKFSAYLRTRSQIHDTNIQNPKKFDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISESAEENGDDIEIVFYDTSMKTWRFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGSLNFIDVIYKKPEDDQSESSCLAAEKESVKNEKILEREKQNQEKDYEKMKKKEILSFELNPNDKKVGEKRIRLFGVNIN* 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10923539 10924609 + Chy2G036710.1 Chy02g01404 220852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01404 356 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 SMART B3_2 176 275 IPR003340 GO:0003677
Chy02g01404 356 Pfam B3 DNA binding domain 176 266 IPR003340 GO:0003677
Chy02g01404 356 Gene3D - 165 289 IPR015300 -
Chy02g01404 356 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 16 356 - -
Chy02g01404 356 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
Chy02g01404 356 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 16 356 IPR044800 GO:0003700
Chy02g01404 356 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Chy02g01404 356 Coils Coil 309 329 - -
Chy02g01404 356 ProSiteProfiles B3 DNA-binding domain profile. 176 288 IPR003340 GO:0003677
Chy02g01404 356 CDD B3_DNA 174 265 IPR003340 GO:0003677
Chy02g01404 356 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Chy02g01404 356 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01404 K09287 RAV; RAV-like factor - csv:101219913 709.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01404 Chy-Chr2:10923539 Chy02g02107 Chy-Chr2:25405981 1.65E-106 dispersed
Chy02g01404 Chy-Chr2:10923539 Chy09g01354 Chy-Chr9:15378053 1.22E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01900 . 1 164 RAV Transcription Factor Family AT2G36080 60.6 1.4e-48 189.5
Chy11g01776 . 15 127 RAV Transcription Factor Family AT2G36080 69.8 9.8e-42 166.8
Chy09g01354 . 29 140 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Chy10g01117 CCT,ECH 173 302 RAV Transcription Factor Family AT2G36080 58.8 3.8e-38 154.8
Chy07g01218 . 1 105 RAV Transcription Factor Family AT2G36080 70.6 5.0e-38 154.5
Chy09g01354 . 28 146 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Chy11g01776 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Chy07g01218 . 1 249 RAV Transcription Factor Family AT2G46870 50.6 2.7e-50 196.1
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Chy04g01900 . 36 156 RAV Transcription Factor Family AT2G46870 62.9 1.5e-37 153.7
Chy04g01900 . 33 167 RAV Transcription Factor Family AT3G11580 65.7 1.3e-44 176.8
Chy09g01354 . 29 142 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Chy11g01776 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Chy07g01218 . 1 105 RAV Transcription Factor Family AT3G11580 65.8 6.7e-38 154.5
Chy09g01354 . 30 148 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Chy11g01776 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Chy04g01900 . 41 156 RAV Transcription Factor Family AT3G61970 63.8 7.8e-39 157.9
Chy09g01354 . 32 147 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Chy11g01776 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Chy07g01218 . 1 130 RAV Transcription Factor Family AT4G01500 55.8 3.7e-37 152.5
Chy04g01900 . 41 206 RAV Transcription Factor Family AT5G06250 54.8 3.0e-50 195.7
Chy07g01218 . 1 105 RAV Transcription Factor Family AT5G06250 69.8 4.8e-40 161.8
Chy09g01354 . 32 140 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Chy11g01776 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Chy10g01117 CCT,ECH 179 298 RAV Transcription Factor Family AT5G06250 57.9 5.0e-37 151.8
Chy02g02107 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 4.3e-86 315.1
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G50680 63.3 4.3e-78 288.5
Chy02g02107 . 41 340 RAV Transcription Factor Family AT1G51120 52.5 1.9e-84 309.7
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 5.9e-78 288.1
Chy10g01117 CCT,ECH 22 343 RAV Transcription Factor Family AT1G13260 65.9 1.1e-105 380.2
Chy09g00618 CCT,ECH 1 289 RAV Transcription Factor Family AT1G13260 61.0 4.1e-92 335.1
Chy04g01900 . 41 193 RAV Transcription Factor Family AT1G13260 57.5 3.4e-38 156.0
Chy09g01354 . 33 140 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Chy11g01776 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Chy10g01117 CCT,ECH 15 341 RAV Transcription Factor Family AT3G25730 62.3 3.7e-98 355.1
Chy09g00618 CCT,ECH 34 289 RAV Transcription Factor Family AT3G25730 65.6 3.0e-87 318.9
Chy10g01117 CCT,ECH 1 345 RAV Transcription Factor Family AT1G68840 61.6 8.2e-112 400.6
Chy09g00618 CCT,ECH 1 292 RAV Transcription Factor Family AT1G68840 58.8 7.9e-91 330.9
Chy04g01900 . 41 173 RAV Transcription Factor Family AT1G68840 62.7 1.6e-38 157.1
Chy09g01354 . 32 140 RAV Transcription Factor Family AT1G68840 70.3 2.1e-38 156.8
Chy11g01776 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
Chy10g01117 CCT,ECH 15 341 RAV Transcription Factor Family AT3G25730 62.3 3.7e-98 355.1
Chy09g00618 CCT,ECH 34 289 RAV Transcription Factor Family AT3G25730 65.6 3.0e-87 318.9
Chy02g02107 . 41 340 RAV Transcription Factor Family AT1G51120 52.5 1.9e-84 309.7
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G51120 63.2 5.9e-78 288.1
Chy04g01900 . 33 167 RAV Transcription Factor Family AT3G11580 65.7 1.3e-44 176.8
Chy09g01354 . 29 142 RAV Transcription Factor Family AT3G11580 60.8 2.7e-39 159.1
Chy11g01776 . 15 134 RAV Transcription Factor Family AT3G11580 59.1 6.0e-39 157.9
Chy07g01218 . 1 105 RAV Transcription Factor Family AT3G11580 65.8 6.7e-38 154.5
Chy09g01354 . 32 147 RAV Transcription Factor Family AT4G01500 68.3 2.9e-42 169.5
Chy11g01776 . 9 127 RAV Transcription Factor Family AT4G01500 65.6 4.2e-41 165.6
Chy07g01218 . 1 130 RAV Transcription Factor Family AT4G01500 55.8 3.7e-37 152.5
Chy04g01900 . 1 164 RAV Transcription Factor Family AT2G36080 60.6 1.4e-48 189.5
Chy11g01776 . 15 127 RAV Transcription Factor Family AT2G36080 69.8 9.8e-42 166.8
Chy09g01354 . 29 140 RAV Transcription Factor Family AT2G36080 68.7 7.0e-40 160.6
Chy10g01117 CCT,ECH 173 302 RAV Transcription Factor Family AT2G36080 58.8 3.8e-38 154.8
Chy07g01218 . 1 105 RAV Transcription Factor Family AT2G36080 70.6 5.0e-38 154.5
Chy04g01900 . 41 206 RAV Transcription Factor Family AT5G06250 54.8 3.0e-50 195.7
Chy07g01218 . 1 105 RAV Transcription Factor Family AT5G06250 69.8 4.8e-40 161.8
Chy09g01354 . 32 140 RAV Transcription Factor Family AT5G06250 64.7 1.8e-39 159.8
Chy11g01776 . 18 127 RAV Transcription Factor Family AT5G06250 65.0 1.8e-39 159.8
Chy10g01117 CCT,ECH 179 298 RAV Transcription Factor Family AT5G06250 57.9 5.0e-37 151.8
Chy09g01354 . 28 146 RAV Transcription Factor Family AT2G46870 85.8 3.0e-57 219.2
Chy11g01776 . 8 127 RAV Transcription Factor Family AT2G46870 78.3 1.4e-51 200.3
Chy07g01218 . 1 249 RAV Transcription Factor Family AT2G46870 50.6 2.7e-50 196.1
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT2G46870 69.6 2.8e-39 159.5
Chy04g01900 . 36 156 RAV Transcription Factor Family AT2G46870 62.9 1.5e-37 153.7
Chy02g02107 . 45 339 RAV Transcription Factor Family AT1G50680 54.0 4.3e-86 315.1
Chy02g01404 . 52 266 RAV Transcription Factor Family AT1G50680 63.3 4.3e-78 288.5
Chy09g01354 . 30 148 RAV Transcription Factor Family AT3G61970 80.3 2.5e-53 206.1
Chy11g01776 . 16 127 RAV Transcription Factor Family AT3G61970 80.2 1.2e-47 187.2
Chy10g01117 CCT,ECH 179 287 RAV Transcription Factor Family AT3G61970 70.0 1.6e-39 160.2
Chy04g01900 . 41 156 RAV Transcription Factor Family AT3G61970 63.8 7.8e-39 157.9
Chy10g01117 CCT,ECH 22 343 RAV Transcription Factor Family AT1G13260 65.9 1.1e-105 380.2
Chy09g00618 CCT,ECH 1 289 RAV Transcription Factor Family AT1G13260 61.0 4.1e-92 335.1
Chy04g01900 . 41 193 RAV Transcription Factor Family AT1G13260 57.5 3.4e-38 156.0
Chy09g01354 . 33 140 RAV Transcription Factor Family AT1G13260 71.6 7.6e-38 154.8
Chy11g01776 . 19 127 RAV Transcription Factor Family AT1G13260 69.1 3.8e-37 152.5
Chy10g01117 CCT,ECH 1 345 RAV Transcription Factor Family AT1G68840 61.6 8.2e-112 400.6
Chy09g00618 CCT,ECH 1 292 RAV Transcription Factor Family AT1G68840 58.8 7.9e-91 330.9
Chy04g01900 . 41 173 RAV Transcription Factor Family AT1G68840 62.7 1.6e-38 157.1
Chy09g01354 . 32 140 RAV Transcription Factor Family AT1G68840 70.3 2.1e-38 156.8
Chy11g01776 . 18 134 RAV Transcription Factor Family AT1G68840 64.7 4.6e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002261 1 6 1 2 2 2 3 2 1 2 2 2 3 2 1 3 2 2 3 2 2 2 2 2 2 2 2 3 1 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17543 PF02362 B3 8.50E-27 CL0405 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01404 Chy_Chr02 FPKM 53.84922 56.706284 154.59314 147.547073 79.5606 86.730652 79.676338 202.113113 202.313843 193.292831