Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01520 ATGACATTAATGGCTGCTGGGTTTTTGTTCCTCTCCGCCGGAGATTCACCAGCTGTGGCTGCCGCACGCCGTCTTCCTTCCGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCATCGTCGCCGATGAACTCTCCCTCGGTTTCAATTCAGCCTCCACCATTCCACCACCCCGGATGTGGCCCTCATCCAGACCCCTCACCATCGGTTATAACCACACGCCGGCGCCGACGCCGGACATGGTGGGTCTCATGGCCTCAGGCTTCGGAGTTGGCGTTAGCGTTTTGCCTCTCCTTACAGGCCTCGCGCCGTCGAGTGTAGGAATTGAAGAAGCTAATTTAATGATCAGCCGTGGTGGCGGCGGCGACGACGGTGGCGGCGGAATTCAATTCAATGGGAATAATTTAGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGTTTGAATTCGGGGGTCGGAACTTGCCATGATTGTGGGAACCAAGCCAAGAAAGATTGTAGTCACCGGCGGTGCCGGAGCTGCTGTAAAAGCCGTGGGTTTGATTGTTCAACTCACGTGAAAAGCACGTGGGTGCCAGCAGCTCGAAGGAGAGAACGTCAGATGATGGGTGCGGCGTCGGATGCAGCGGCCGGCGGGACCTCGTCGGGGTCTACGTCCGGCGGGAAGAAGCCGAGGTTGATCGCTTCACAGACGACTACTAATTCTCATACTTCTACTTCAAATACTCCAACACCAAGCTTTGACGCTTCCTCAGCCGCTGATATGAGTAGTAAAAAGGCAAAAAAGCTGCCGGAACAAATCCGAGCGCCTGCGGTGTTCAAATGCGTGCGGGTAACAGCAGTGGAGGGCGGCAGGACCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTTAAAGGTTATTTGTACGACCATGGAGTAGAAGCTAGAGACGGGTTTCCGATGATGTCGAATTTGCATCTTGGAGATGGCGGTTCAACTTCGTCACCGGTCATTGATCTTGCTGATGTTTACGGCAGCTCCGCCACCCGCGGTGGGGGACTGGCTGGAGGCTCCGGCTATGGTAATTCTATAAATTGA 1107 55.28 MTLMAAGFLFLSAGDSPAVAAARRLPSDSGAFADWVAPPSAIVADELSLGFNSASTIPPPRMWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGRTGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDLADVYGSSATRGGGLAGGSGYGNSIN* 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13004330 13006925 + Chy2G037870.1 Chy02g01520 220968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01520 368 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 138 368 IPR007818 GO:0003700|GO:0006355
Chy02g01520 368 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 156 198 IPR006510 -
Chy02g01520 368 MobiDBLite consensus disorder prediction 201 265 - -
Chy02g01520 368 Pfam Domain of unknown function (DUF702) 156 317 - -
Chy02g01520 368 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 265 316 IPR006511 -
Chy02g01520 368 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 138 368 - -
Chy02g01520 368 MobiDBLite consensus disorder prediction 212 255 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01520 Chy05g00162 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00602 Chy-Chr2:3653304 Chy02g01520 Chy-Chr2:13004330 1.97E-36 dispersed
Chy02g01520 Chy-Chr2:13004330 Chy10g01367 Chy-Chr10:17909169 1.62E-50 dispersed
Chy02g01520 Chy-Chr2:13004330 Chy05g00162 Chy-Chr5:1286980 5.73E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17549 PF05142 DUF702 1.90E-56 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01520 - - csv:101217349 498.049