Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01591 ATGGAAGAAGCTGCTGTTCCTCCATATTTTATTTGCCCAATTTCACTACAAATCATGAAAGATCCAGTTACAGCCACCACTGGAATTACTTATGATCGTGAAAGTATTGAGAATTGGTTTTTGACCTCTAAAGACGATGCAATCTTTTGCCCTCTCACCAAGCAATCTTTGACCAAAGCTTCCGACTTGACACCAAACCACACGCTTCGTCGCCTCATTAAGTCTTGGATGGTTGAGAATGCTTCCCCCGGTGGTGGAGATGATCCAATTCTAACTCCTAGACCACTTTTAGACAAGACCCGTCTCCGAAAAATCTTGCTGGAAGTTGCTGCCGCTTCGGATGAGCGGCTTCGGATCGATTCCGTGAAGAAGCTTCATGCTTTGGCTATTGAAAGTGATACAGCAAATCGAGGGCGTATGGAGGCGGTCGGCGTGGCGAAGGGGATGGTCTTGTTTGTTATAAGACGTTTTAGGGAAGGAAGAGTTGGTGGACTTGAGGAAGCTTTGAAGATTCTTAGTCTACTTTCACATTATTCAATTTCTGAAATTAGAGTTCTTGATTTTTTTGAATCATTGACTTGGGTTTTGGGTTTGGAGATGGAAAATCACATAATAATCAAAAGCTACGCCATTGAAGTGTTGAAGAAAGCAACCGATGTGGCTCCCTCCACCATTCTCACCCAAATAAACATTGAGTTCTTCAAAAATATCACAAATCTCTTGAGAGAAAAAATCTCAAATTCAACTCTTAAAACAACACTCACTATTCTAACAAACATATGCCCCTCTGGACGAAACCGAGTCAAGCTTGTTGAAGTTGGGGCAGTTTTTGACCTAATCGCACTCGAGCTCGAGAAGCCAGAGAAGAACACAACCGAGCTCATCTTCAACCTCTTGGCCCACCTATGCTCCACGGCAGATGGGAGAGCAGAGCTCATCCGCCACGCCGGGGGCATCGCGGTGGTTTCGAAGAGGATACTTAGAGTTTCGATTGCAACTACGGATCGAGCGATTCAAATTCTATCGTTGATATCGAAACACTCCGCAAGGAAGGATGTTCTTTTAGAGATGTTGAGGGTTGGGGCAGTGTCAAAGCTTTGCATGATGATGCAATCTAATTGTGAAGGATACTTGAAGGAGAAAGCTAGAGAGATTTTGAGGATGCATTCAAATGTGTGGAGTAATTCTCCATGCATTGGGGTTTATGTGATGACTAGAGACCCCAGATAG 1230 43.9 MEEAAVPPYFICPISLQIMKDPVTATTGITYDRESIENWFLTSKDDAIFCPLTKQSLTKASDLTPNHTLRRLIKSWMVENASPGGGDDPILTPRPLLDKTRLRKILLEVAAASDERLRIDSVKKLHALAIESDTANRGRMEAVGVAKGMVLFVIRRFREGRVGGLEEALKILSLLSHYSISEIRVLDFFESLTWVLGLEMENHIIIKSYAIEVLKKATDVAPSTILTQINIEFFKNITNLLREKISNSTLKTTLTILTNICPSGRNRVKLVEVGAVFDLIALELEKPEKNTTELIFNLLAHLCSTADGRAELIRHAGGIAVVSKRILRVSIATTDRAIQILSLISKHSARKDVLLEMLRVGAVSKLCMMMQSNCEGYLKEKAREILRMHSNVWSNSPCIGVYVMTRDPR* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14419847 14421076 + Chy2G038580.1 Chy02g01591 221039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01591 409 CDD RING-Ubox_PUB 10 55 IPR045210 -
Chy02g01591 409 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Chy02g01591 409 PANTHER WDSAM1 PROTEIN 4 405 IPR045185 GO:0061630
Chy02g01591 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 405 - -
Chy02g01591 409 SUPERFAMILY ARM repeat 111 393 IPR016024 -
Chy02g01591 409 Gene3D - 103 388 IPR011989 -
Chy02g01591 409 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Chy02g01591 409 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Chy02g01591 409 SUPERFAMILY RING/U-box 4 81 - -
Chy02g01591 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01591 Chy05g00202 CCT
Chy02g01591 Chy05g00202 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01591 Chy-Chr2:14419847 Chy05g00202 Chy-Chr5:1692654 2.08E-95 dispersed
Chy02g01591 Chy-Chr2:14419847 Chy02g01594 Chy-Chr2:14589805 7.42E-63 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01591 - - csv:101220900 755.747