Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01676 ATGGAGTACGATTCTGGAATTCCGATGTCTGTGACGGAGGGACACTCCTCTGCCCTTGCACCATCCTTGCGCGAAGGTTCTCTTGCTAATTTCGATGCACTTTGGCAAATGAACTTGGGATCAGGTGAAATAATGGGATCTGGATCTTATCCAGTGCGACCTGGAGAGCCAGACTGTTCTTATTACATCAGAACTGGCCTATGTAGATTTGGGGCTACATGTAGATTTAATCATCCACCTAATAGAGAGCTGGCTATTGCCACTGCAAGAATGAAGGGGGAGTTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTACCTGAAGACAGGAACTTGCAAGTTTGGGGCCACGTGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCACTTCGCCCGAGTGAAACTGAATGTGCTTATTATTTAAGAACTGGACAATGCAAGTTTGGAAATACATGTAAATTCCACCATCCTCAACCAACTAATATGATGGTCTCATTGCGTGGTTCTCCTATTTATCCAACCGTACAATCACCAACTCCTGGTCAGCAATCGTATCCAGGAGGAAGTACAAATTGGTCTAGGGCTTCATTTATTCCCAGTCCACGATGGCAAGGTCCTTCCAGTTATGCATCTTTAATATTACCTCAGGGAGTTCTTTCTGTTCCAGGTTGGAATGCATTCAATGATCAGCTAGGATCGGTTTCGTCTTCAGAAAGTCCACAACAAACGAGGGAGAATGTATTTCCTGAGAGGCCTGGCCAGCCTGAATGTCAGTTTTACATGAAGACTGGAGATTGCAAGTTTGGTGCTGTTTGTCGATTTCATCATCCCAGAGAAAGAGTACTTCCTGCTCCAGATTGTGTCTTGAGTCCAATAGGCCTGCCATTACGTCCGGGAGAACCGTTGTGCATCTTTTATTCTCGTTATGGGATCTGTAAGTTTGGTCCAAGCTGCAAGTTTGATCACCCTATGGGAATCTTCACATACAATCTCTCAGCAGCATCATCAGCCAATGCCCCGGTTCAGCATTTGTTTGGGACGTCTTCGGGAACAACTGCACTGAACTTATCATCTGAGGGGCTAGTTGAAGCAGGATCTGCAAAGCCAAGGCGGCTATCAATCTCGGAGACTCGAGAAATGCCATCTGATGATGAAAATGACGCCGAGGGCTGA 1212 45.79 MEYDSGIPMSVTEGHSSALAPSLREGSLANFDALWQMNLGSGEIMGSGSYPVRPGEPDCSYYIRTGLCRFGATCRFNHPPNRELAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPSETECAYYLRTGQCKFGNTCKFHHPQPTNMMVSLRGSPIYPTVQSPTPGQQSYPGGSTNWSRASFIPSPRWQGPSSYASLILPQGVLSVPGWNAFNDQLGSVSSSESPQQTRENVFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERVLPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGIFTYNLSAASSANAPVQHLFGTSSGTTALNLSSEGLVEAGSAKPRRLSISETREMPSDDENDAEG* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16591531 16603834 + Chy2G039430.1 Chy02g01676 221124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01676 403 MobiDBLite consensus disorder prediction 245 261 - -
Chy02g01676 403 MobiDBLite consensus disorder prediction 376 403 - -
Chy02g01676 403 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Chy02g01676 403 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Chy02g01676 403 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Chy02g01676 403 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Chy02g01676 403 SMART c3hfinal6 264 291 IPR000571 GO:0046872
Chy02g01676 403 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Chy02g01676 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 337 IPR000571 GO:0046872
Chy02g01676 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 147 171 IPR000571 GO:0046872
Chy02g01676 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 101 125 IPR000571 GO:0046872
Chy02g01676 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
Chy02g01676 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 80 IPR000571 GO:0046872
Chy02g01676 403 SUPERFAMILY CCCH zinc finger 146 172 IPR036855 GO:0046872
Chy02g01676 403 SUPERFAMILY CCCH zinc finger 313 337 IPR036855 GO:0046872
Chy02g01676 403 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Chy02g01676 403 Gene3D - 53 136 - -
Chy02g01676 403 Gene3D - 143 190 - -
Chy02g01676 403 Gene3D - 253 339 - -
Chy02g01676 403 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 28 257 - -
Chy02g01676 403 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 256 400 - -
Chy02g01676 403 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Chy02g01676 403 SUPERFAMILY CCCH zinc finger 58 81 IPR036855 GO:0046872
Chy02g01676 403 ProSiteProfiles Zinc finger C3H1-type profile. 264 292 IPR000571 GO:0046872
Chy02g01676 403 PANTHER PROTEIN PHOSPHATASE RELATED 256 400 - -
Chy02g01676 403 PANTHER PROTEIN PHOSPHATASE RELATED 28 257 - -
Chy02g01676 403 SUPERFAMILY CCCH zinc finger 268 293 IPR036855 GO:0046872
Chy02g01676 403 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Chy02g01676 403 MobiDBLite consensus disorder prediction 245 264 - -
Chy02g01676 403 SUPERFAMILY CCCH zinc finger 102 127 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01676 Chy-Chr2:16591531 Chy06g00673 Chy-Chr6:4622284 1.38E-100 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17552 PF00642 zf-CCCH 2.70E-10 CL0537 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01676 - - csv:101221929 852.432