Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01770 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCTCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGTTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCCAGGATTTTTTGATGTTATTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGCAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAGGGTGATGCCATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGTACACCTATTAGAGACGATTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCTGAAGACAAAGAAGAACCAGAGGAGACGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAGAGATCAAAAGTGCTACAAAGGGAGCTTCCACGGCCTCCTACTGCGTCTTTGGAACTTATTAGAAATTCTTTGACGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAACGCAAAGTATCCAATTGATGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCTACTGCTGTCATCCCCACAATGGATGATTTTGAAGAAACTGAGATGGAGGAGGCCGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAGTTTGTAGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCGAGCGTTGCTGGAAATCATGAGAAATTAGCCGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAAGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAAGCAACTTTCAAACAGATAGACACTGCAGCTACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACATCGGATTAGTCGTATCTGGGAGGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACTCTTCAGTTACGTTATGGAAACCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGAGATTGCTGCAGAGAGTCACGCTCTTCAGTTGGCTGAGGTTGAGCCTAACCAAAACGTTGGAGAAAATGCTGATTGTTCCGAAGCCATGTCTGCATCAGTAGCAGCAGTTGATTGTGAAAATTCAGTGCCTGTTACCACCTCCATTGAATTAACGGGTGAACAACCAAACTCATCTGTGGGACATGAAAACAAAACTAATAAGGCCATGGATATCCACTGTGAAAAAGAAAGTGTAGCAGTGAATTTGGATATTGGTTTATCTGATAACAAACTACCTTCTGCAGCGGGAGATGCATCACTGCCTCACAATGGCTTTGAAGAGTCTGATAAAAGTCTAACTATTGATGTTCCTCGTCAAGAAAACTTGGGCCCTGATGCAAATGGCAGTTCAGATTCAGTTGATGGTGCAACTATTGAAAATGATAAATGTAGTACTGGTAATGTCGAGGAAGTCAAAGATGTTGAAACTCAGCAGCGTGTGATTGAAACTGAACATAACTCAGATATGCATTCGATTAATCAGGAGGCGGCTGCACCTGCATCTAAGGATGTTCCTGTGGATGATGGCAACACAGGAGGAATGGAATCAAATGTCTAG 3051 43.69 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVIEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDDLRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEETIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLTRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAVIPTMDDFEETEMEEADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISRIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDRKAQAQKEEEIAAESHALQLAEVEPNQNVGENADCSEAMSASVAAVDCENSVPVTTSIELTGEQPNSSVGHENKTNKAMDIHCEKESVAVNLDIGLSDNKLPSAAGDASLPHNGFEESDKSLTIDVPRQENLGPDANGSSDSVDGATIENDKCSTGNVEEVKDVETQQRVIETEHNSDMHSINQEAAAPASKDVPVDDGNTGGMESNV* 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19077332 19101304 - Chy2G040370.1 Chy02g01770 221218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01770 1016 CDD SANT_CDC5_II 55 106 - -
Chy02g01770 1016 Gene3D - 5 58 - -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 941 962 - -
Chy02g01770 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 935 1016 - -
Chy02g01770 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 382 421 - -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 963 987 - -
Chy02g01770 1016 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 910 - -
Chy02g01770 1016 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Chy02g01770 1016 Coils Coil 167 187 - -
Chy02g01770 1016 Pfam Myb-like DNA-binding domain 10 70 - -
Chy02g01770 1016 SMART sant 58 105 IPR001005 -
Chy02g01770 1016 SMART sant 6 55 IPR001005 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 110 150 - -
Chy02g01770 1016 Gene3D - 59 114 - -
Chy02g01770 1016 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Chy02g01770 1016 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 400 414 - -
Chy02g01770 1016 CDD SANT 10 53 IPR001005 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 600 622 - -
Chy02g01770 1016 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Chy02g01770 1016 PANTHER - 1 910 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01770 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1866.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01770 Chy-Chr2:19077332 Chy04g02148 Chy-Chr4:26662190 1.23E-10 dispersed
Chy02g01770 Chy-Chr2:19077332 Chy03g01233 Chy-Chr3:15434528 2.58E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g01770 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.2 0.0e+00 1204.1
Chy06g01631 . 285 737 MYB-Related Transcription Factor Family AT3G18100 57.5 1.1e-149 527.3
Chy06g01631 . 285 737 MYB-Related Transcription Factor Family AT3G18100 57.5 1.1e-149 527.3
Chy02g01770 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.2 0.0e+00 1204.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17555 PF11831 Myb_Cef 2.50E-58 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy02g01770 Chy_Chr02 FPKM 3.163094 2.502872 4.159357 3.680468 2.594011 4.608291 1.678434 1.490412 1.238818 1.064054