Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01770 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCTCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCTTCGTTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAGCCTCCTCCAGGATTTTTTGATGTTATTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGCAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCTGGGAAGGGTGATGCCATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGTACACCTATTAGAGACGATTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCTGAAGACAAAGAAGAACCAGAGGAGACGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAGAGATCAAAAGTGCTACAAAGGGAGCTTCCACGGCCTCCTACTGCGTCTTTGGAACTTATTAGAAATTCTTTGACGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAACGCAAAGTATCCAATTGATGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCTACTGCTGTCATCCCCACAATGGATGATTTTGAAGAAACTGAGATGGAGGAGGCCGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAGTTTGTAGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCGAGCGTTGCTGGAAATCATGAGAAATTAGCCGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAAGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAAGCAACTTTCAAACAGATAGACACTGCAGCTACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACATCGGATTAGTCGTATCTGGGAGGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACTCTTCAGTTACGTTATGGAAACCTTTTGGGGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGAGATTGCTGCAGAGAGTCACGCTCTTCAGTTGGCTGAGGTTGAGCCTAACCAAAACGTTGGAGAAAATGCTGATTGTTCCGAAGCCATGTCTGCATCAGTAGCAGCAGTTGATTGTGAAAATTCAGTGCCTGTTACCACCTCCATTGAATTAACGGGTGAACAACCAAACTCATCTGTGGGACATGAAAACAAAACTAATAAGGCCATGGATATCCACTGTGAAAAAGAAAGTGTAGCAGTGAATTTGGATATTGGTTTATCTGATAACAAACTACCTTCTGCAGCGGGAGATGCATCACTGCCTCACAATGGCTTTGAAGAGTCTGATAAAAGTCTAACTATTGATGTTCCTCGTCAAGAAAACTTGGGCCCTGATGCAAATGGCAGTTCAGATTCAGTTGATGGTGCAACTATTGAAAATGATAAATGTAGTACTGGTAATGTCGAGGAAGTCAAAGATGTTGAAACTCAGCAGCGTGTGATTGAAACTGAACATAACTCAGATATGCATTCGATTAATCAGGAGGCGGCTGCACCTGCATCTAAGGATGTTCCTGTGGATGATGGCAACACAGGAGGAATGGAATCAAATGTCTAG 3051 43.69 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVIEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDDLRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEETIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLTRADGDKSSFVPPTPIEQADEMIRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAVIPTMDDFEETEMEEADYLIKEEARYLCAAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISRIWEEVQKQKELERTLQLRYGNLLGDLEKMQKIMVDRKAQAQKEEEIAAESHALQLAEVEPNQNVGENADCSEAMSASVAAVDCENSVPVTTSIELTGEQPNSSVGHENKTNKAMDIHCEKESVAVNLDIGLSDNKLPSAAGDASLPHNGFEESDKSLTIDVPRQENLGPDANGSSDSVDGATIENDKCSTGNVEEVKDVETQQRVIETEHNSDMHSINQEAAAPASKDVPVDDGNTGGMESNV* 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19077332 19101304 - Chy2G040370.1 Chy02g01770 221218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01770 1016 CDD SANT_CDC5_II 55 106 - -
Chy02g01770 1016 Gene3D - 5 58 - -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 941 962 - -
Chy02g01770 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 935 1016 - -
Chy02g01770 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 382 421 - -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 963 987 - -
Chy02g01770 1016 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 910 - -
Chy02g01770 1016 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Chy02g01770 1016 Coils Coil 167 187 - -
Chy02g01770 1016 Pfam Myb-like DNA-binding domain 10 70 - -
Chy02g01770 1016 SMART sant 58 105 IPR001005 -
Chy02g01770 1016 SMART sant 6 55 IPR001005 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 110 150 - -
Chy02g01770 1016 Gene3D - 59 114 - -
Chy02g01770 1016 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Chy02g01770 1016 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 400 414 - -
Chy02g01770 1016 CDD SANT 10 53 IPR001005 -
Chy02g01770 1016 MobiDBLite consensus disorder prediction 600 622 - -
Chy02g01770 1016 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Chy02g01770 1016 PANTHER - 1 910 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01770 Chy-Chr2:19077332 Chy04g02148 Chy-Chr4:26662190 1.23E-10 dispersed
Chy02g01770 Chy-Chr2:19077332 Chy03g01233 Chy-Chr3:15434528 2.58E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17555 PF11831 Myb_Cef 2.50E-58 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01770 K12860 - csv:101205030 1866.28