Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01850 ATGGGTGAAGTAGGGAATCAAGAGATGGATAATTTATCCTCGGTAATTCCTCAAACTGATAGTGTGGAACTGGGTAATGTTGTTTCATCTGATGTTCCTGCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGACTGGTGGTGCAGTTTTGCCGGAGCATCCTCATTTTCAGTCTCGGAGTCGGTGTCAAGAATCAGAGTCACCTGCTGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACAATTAGTGGTTTTGCCCATTGGAACTAAAGCGCCTCTTCCACCTGCGAGAAAGCCAGATTCTCCAAAGTCAAGATCAAGGTCTAATGTTGAAACAAAAGATGCTACTCCAAAGAAACAAAAACAGTGCAAGTTGTGCAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGTGAGTGTTTTGCATCTGGAGTGTACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTCGAGCATGAAGCGTCAAGGAGAGAGGCAGTCGAAACTACTTTAGAGCGTAATCCAAATGCATTCCGACCAAAAATTGCTAACAGCCCACATGGAACACGAGAGAGCAGGGATGAGATTGGAGAGTTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTCTGCTCTGAAAACTGTAAGTGCATGGACTGTAAAAATTTTGAAGGCAGTGAAGAAAGACAAGCTCTTTTCCATGGGGACCATGCCAACAACATGGCTTATATTCAACAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTACGCTTGCCTTCCCGTTTCAAAGAAAAGAAAAGGCCCAGAGCTAGGCTTTGGCCCTGTAGGGAAGGATTCCCCTCTCAACAGTATACCGCAACTTCATCAGGCAAATAATATAATGTCTTCAGGCACGTCTACATCATCTCCCTTCCCGGTTGTTCATGTTGGTAGCCCTGTAGCATCGGGGCCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAGCCGAACGACTTGAAGGAGCTTTGCTCGGTTTTAGTGGTGTTAACTAGTGAAGTTACCAAGATCCAAGCAGAACAAAGAAGTGATGAGAAACAGATAAATGATCCACAACAGATATCTCGTGCTTCATCTAGTGGAGACGGGGTACAACATCAGAAGGCCGAAGAGAAAGCTGCAGATGGTGAGTGTGGAAGTTCAAATCAAAGTGATAGGAGTGTACATGACAATTCCAATTCAAATAGTTCGGATATGACAAGAGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGACGAACAAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGATCTGCCGCCCATGATTGCAACACGTCATCACATGTTCTCGATAAGTCTCTTTCAGAAGTGTACATCGAGCAGGAACGAATCGTGCTGACAAAGTTTCGCGATTGCCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAACTCACTTCTAGAAGTGAAAGCGAAATGGGGAATCAAAATCAGAGCAACAACTTCACCTCAAATAGTGGGTGCCAACAGAGATCTATTAGCAATGGGGTTGTAAAAAATGTTGCTCTCTCGGCACCCCGAATTCCACCTGCCGGCACTGCAGCTCATCATCGGAATAACGATCTCCCGCTCAAAATTCTTCCCGTACCTAAAAATAGGAAGAGTAAACCACAAATTGACAGAGAAGTGTAG 1809 44.72 MGEVGNQEMDNLSSVIPQTDSVELGNVVSSDVPAKKLARQLDFTGTGGAVLPEHPHFQSRSRCQESESPAVMVVQSQSQPQSPQQLVVLPIGTKAPLPPARKPDSPKSRSRSNVETKDATPKKQKQCKLCNCKHSRCLKLYCECFASGVYCDGCNCTNCHNNVEHEASRREAVETTLERNPNAFRPKIANSPHGTRESRDEIGELVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHANNMAYIQQAANAAITGAIGSSGYACLPVSKKRKGPELGFGPVGKDSPLNSIPQLHQANNIMSSGTSTSSPFPVVHVGSPVASGPSKFSFRSLLADLIQPNDLKELCSVLVVLTSEVTKIQAEQRSDEKQINDPQQISRASSSGDGVQHQKAEEKAADGECGSSNQSDRSVHDNSNSNSSDMTRARPMSPGTLALMCDEQDTMFMGAGLADGSAAHDCNTSSHVLDKSLSEVYIEQERIVLTKFRDCLNKLITLGEIKETKLTSRSESEMGNQNQSNNFTSNSGCQQRSISNGVVKNVALSAPRIPPAGTAAHHRNNDLPLKILPVPKNRKSKPQIDREV* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20804786 20810048 + Chy2G041170.1 Chy02g01850 221298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01850 602 MobiDBLite consensus disorder prediction 1 30 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 422 448 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 395 409 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 45 118 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 383 451 - -
Chy02g01850 602 ProSiteProfiles CRC domain profile. 126 250 IPR005172 -
Chy02g01850 602 MobiDBLite consensus disorder prediction 104 118 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 567 602 - -
Chy02g01850 602 PANTHER TESMIN/TSO1-RELATED 29 91 IPR028307 -
Chy02g01850 602 PANTHER TESMIN/TSO1-RELATED 100 549 IPR028307 -
Chy02g01850 602 SMART CXC_2 210 251 IPR033467 -
Chy02g01850 602 SMART CXC_2 125 165 IPR033467 -
Chy02g01850 602 MobiDBLite consensus disorder prediction 62 88 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 7 26 - -
Chy02g01850 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 128 162 IPR005172 -
Chy02g01850 602 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Chy02g01850 602 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 29 91 - -
Chy02g01850 602 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 100 549 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 525 547 - -
Chy02g01850 602 MobiDBLite consensus disorder prediction 528 547 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g01850 Chy05g01376 CCT
Chy02g01850 Chy05g01376 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01850 Chy-Chr2:20804786 Chy05g00396 Chy-Chr5:4248715 1.88E-35 dispersed
Chy02g01850 Chy-Chr2:20804786 Chy05g01376 Chy-Chr5:17846256 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17558 PF03638 TCR 3.20E-12 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01850 - - csv:101222405 1130.55