Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01948 ATGCCCTACATGCAAATGGAGCCAGAAGATAAATATGTGATACCATCTTCTCAAATGGTGTTGAAATCCCACCATGGCTCAAATGATGGTGAGAAGACTAGTTTATGGAAAAGGAAAGGAAGGAGGAGAGCAAAAGGACTTTCCATGGAAGGATTGAAGCAAAAGGAGCTCGATCCAAATCTGGAGTTTCCCTCTTCTTCTTGCAAAAGCTTAACATTTCCAAGAAGGCCAGACTTTGGCCAGCTGGGGACTAAATGCTTGGTTAAAGCCAACCACTTCCTAGCCATAATACCTGAATCAGACATAAGCCATTATAACGTTAAGATAACCCCAGAAGTTACTTCTCGTAAAATGAAGAAGAATATACTGACCGAGTTGGTCAAACAATATAGAACTACAGAGCTGGGGATGCGTCTGCCGGTTTACGATGGAGGATGCAACCTGTACACAGCTGGATTGCTGCCTTTCATATCAAAAGAGTTCACTGTCATTTTGGCTAATGAAGAAGAGGGGACAGCCACTCCCAGGGAACGAGAATTTAAAGTGCAGATTAAGTTTGTAACTTTGGCTAGCATGCACCAGTTAAGAGAATTACTCGCTGGCAAACAAGTTAATAACCCTCAAGAAGCTTTGACCATTATTGACATTGTCTTGAGGGAGCTCCATGCTCAAAGATATATATCAGTTGGACGATCCTTTTACTCTCCTTGTATTAAGAAGCCTCAGCATGTTGGGGGTGGTCTGCAAGCATGGCGAGGCTTCTATCAAAGCATCCGACCTACTCAAATGGGATTGTCTCTAAATATTGACATGTCATCCACTGCATTCATTGAAGCAATCCCGGTCATTGATTTTGTCGCTCAACTCTTAAACAAAGACGTGTACTCAAGAACATTGTCTGATGCTGATCGTATCAAGGTCAAAAAAGTACTTAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATGTACGAAGGAAATATCGGATTTCAGGGCTAACATCACAGCCTACAAGAGAGCTAATTTTCCCTCTTGATGAGCACATGAACATGAAATCTGTAGTTGAGTACTTCCAAGAGATGTATGGGTATACCATTCAGTATACACATTTGCCTTGCCTTCAAGTAGGAAACCAGAAGAAGGTGAATTATCTACCCATGGAGGCATGTAAGATACTCAAAGGACAGAGATACACAAAAGGACTTAACGAAAAGCAAATAACTTCCTTGTTGAAGGTTTCATGCCAAAGACCCTCTGATCAGGAAATGGACATTTTACAGACTGTTCATGAGAATGCATATGAGGCAGATCCATACGCAAAAGAATTTCGAATCAGTATCGACAACAAGCTTACATCAGTTGAAGCACGAGTCCTTCCATCTCCATGGCTAAAATTTCATGATACTGGAAAAGAAAAGGAACATCAGCCTCAAGTTGGTCAGTGGAATATGATGAATAAGAAAGTTATAGATGGAAGTGTTATAAGATACTGGGCTTGTATAAATTTCTCACGTAACGTTCAAGAGAGCATAGCTCGTGGTTTCTGTCAACAGCTGGTCCAAATGTGCCAGATCTCTGGCATGGAATTTAACCCAGATCCTGCAATTCCTATATACTCAGCAAGACCAGATCAAGTGAAGAAGGCCTTAAAATTTGTATATGGTGCGGTTTATAACAAAAACGAAGGGAAAGAGTTAGATTTGCTGATAGCTATTCTTCCTGACAACAATGGCTCATTATATGGTGATCTTAAAAGGATCTGTGAAACAGAATTGGGATTGATATCCCAGTGTTGTCTAACAAAACATGTCTTCAAGAAGAGCAGACAGTACTTGGCAAACGTGTCTCTTAAGATCAACGTCAAGATGGGTGGAAGAAACACTGTTCTTTTAGATGCTTTACGGGCAAGAATTCCACTAGTCAGTGACATACCAACCATTATTTTTGGAGCTGATGTCACACATCCAGAATCAGGAGAGGATTCTCTTCCATCAATAGCAGCTGTTGTGGCTTCCCAAGATTGGCCAGAAGTTACAAAATATGCTGGATTGGTATGTGCTCAGCCGCACAGGGAGGAACTGATTCAAGATTTATTCAAAACGTGGAAAGATCCTCATCGGGGAACAGTTGCCGGGGGTATGATAAGGGAGCTCTTGCTTTCATTTAAGAAGGCCACTGGACAAAAACCATTAAGGATAATATTCTATAGGGATGGCGTCAGTGAGGGTCAGTTCTACCAGGTTCTACTGCACGAACTCGATGCCATACGCAAGGCTTGTGCTTCACTAGAACCCAGTTACCAACCTCCAGTAACTTTTATCATAGTCCAAAAGCGACACCACACCAGACTCTTTGCATCCAATCACAATGATAGGAGTAGCACTGACAAGAGTGGTAATATTTTACCAGGTACTGTGGTGGATTCAAAAATATGTCATCCAACTGAGTTCGACTTTTATCTATGCAGTCACGCAGGAATCCAGGGAACAAGTCGTCCTGCACATTATCACGTTCTTTGGGATGAGAACAATTTCAGTGCAGATGAAATTCAATCTCTGACTAATAACCTCTGTTACACGTATGCTCGGTGCACAAGATCGGTCTCAGTAGTGCCTCCAGCATACTACGCTCATTTAGCAGCATACAGAGCTCGATTCTACGTAGAACCCGACGCACAGGAGAATGCCAAAAGATGCTGCACTCGAACCACAAATGGGTCCTGTGTCCGGCCTCTGCCTGCGCTGAAAGAGAGAGTGAAAAATGTAATGTTCTATTGCTGA 2781 42.11 MPYMQMEPEDKYVIPSSQMVLKSHHGSNDGEKTSLWKRKGRRRAKGLSMEGLKQKELDPNLEFPSSSCKSLTFPRRPDFGQLGTKCLVKANHFLAIIPESDISHYNVKITPEVTSRKMKKNILTELVKQYRTTELGMRLPVYDGGCNLYTAGLLPFISKEFTVILANEEEGTATPREREFKVQIKFVTLASMHQLRELLAGKQVNNPQEALTIIDIVLRELHAQRYISVGRSFYSPCIKKPQHVGGGLQAWRGFYQSIRPTQMGLSLNIDMSSTAFIEAIPVIDFVAQLLNKDVYSRTLSDADRIKVKKVLRGVKVEVTHRGNVRRKYRISGLTSQPTRELIFPLDEHMNMKSVVEYFQEMYGYTIQYTHLPCLQVGNQKKVNYLPMEACKILKGQRYTKGLNEKQITSLLKVSCQRPSDQEMDILQTVHENAYEADPYAKEFRISIDNKLTSVEARVLPSPWLKFHDTGKEKEHQPQVGQWNMMNKKVIDGSVIRYWACINFSRNVQESIARGFCQQLVQMCQISGMEFNPDPAIPIYSARPDQVKKALKFVYGAVYNKNEGKELDLLIAILPDNNGSLYGDLKRICETELGLISQCCLTKHVFKKSRQYLANVSLKINVKMGGRNTVLLDALRARIPLVSDIPTIIFGADVTHPESGEDSLPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKTWKDPHRGTVAGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPSYQPPVTFIIVQKRHHTRLFASNHNDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFSADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYVEPDAQENAKRCCTRTTNGSCVRPLPALKERVKNVMFYC* 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22949375 22954611 + Chy2G042150.1 Chy02g01948 221396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01948 926 Pfam Piwi domain 569 887 IPR003165 GO:0003676
Chy02g01948 926 SMART DUF1785_2 227 279 IPR014811 -
Chy02g01948 926 Pfam Argonaute linker 2 domain 423 466 IPR032472 -
Chy02g01948 926 SUPERFAMILY PAZ domain 274 433 IPR036085 GO:0005515
Chy02g01948 926 Gene3D - 637 926 IPR036397 GO:0003676
Chy02g01948 926 PANTHER PROTEIN ARGONAUTE 10 36 925 - -
Chy02g01948 926 CDD PAZ_argonaute_like 279 393 - -
Chy02g01948 926 SUPERFAMILY Ribonuclease H-like 560 890 IPR012337 -
Chy02g01948 926 Gene3D paz domain 273 398 - -
Chy02g01948 926 CDD Piwi_ago-like 438 887 IPR045246 -
Chy02g01948 926 Pfam Argonaute linker 1 domain 228 278 IPR014811 -
Chy02g01948 926 ProSiteProfiles PAZ domain profile. 280 394 IPR003100 GO:0005515
Chy02g01948 926 Pfam PAZ domain 284 410 IPR003100 GO:0005515
Chy02g01948 926 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 36 925 - -
Chy02g01948 926 Pfam Mid domain of argonaute 477 553 IPR032473 -
Chy02g01948 926 Pfam N-terminal domain of argonaute 85 218 IPR032474 -
Chy02g01948 926 Gene3D - 458 631 - -
Chy02g01948 926 ProSiteProfiles Piwi domain profile. 568 889 IPR003165 GO:0003676
Chy02g01948 926 SMART PAZ_2_a_3 284 416 IPR003100 GO:0005515
Chy02g01948 926 SMART Piwi_a_2 568 889 IPR003165 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01948 Chy-Chr2:22949375 Chy12g01567 Chy-Chr12:19234555 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01948 K11593 - csv:101213206 1847.79