Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g01958 ATGAAAGGGGAAGTACAATTGGAGTCATCAATTGGGCAAAACCCTAGTGATTCTGATCCTCTGCTCGAGAATCAGAACGATTCATCATCCCATGGAACCTCTGATGAAATCAAGGATGAGGATACTGAAGCTGGTTCCATTCCTTGTTGTCGTATTTGCTTAGAGAGCGATGCCGAACCAGAAGATGAACTGATTTCTCCATGCATGTGCAAAGGCACACAGCAGTTTGTCCATCGATCTTGTCTTGATCATTGGCGCTCCGTTAAGGAAGGGTTTGCTTTCTCGCATTGCACAACTTGCAAAGCCCAATTTCACCTGAAAGTTTCCTTATTTGAGGACAACTCTTGGCGTAAAGTTAAATTCAGGCTGTTTGTGGCAAGAGATGTTCTCCTTGTATTTGTAGCTGTACAAACTTTAATAGCGGCAATCGGTGGTTATGCATATATTATGGACAAAGACGGGGCATTTAGGAATTCTTTCAGTGATGGATGGGATCGTATTCTGTCTAGACATCCTATTCCATTTTATTATTGTATTGGGGTCCTAGCTTTCTTTGTTCTGCTTGGATTCTTCGGGCTCATACTACATTGTTCGTCCCTGAATAGTAATGACCCAAGAGTTGCTGGGTGTCACAACTGTTGCTATGGATGGGGAATCTTGGATTGTTTCCCTGCATCAATGGAAGCCTGTTTTGCACTTGTTATCGTTTTTGTAGTTATCTTTGTAATCCTTGGCATAGCTTATGGCTTCCTTGCTGCTACTATGGCCATTCAGAGGATCTGGCAAAGACATTACCACATTCTCACAAAAAGGGAACTGACTAAAGAATATGTGGTGGAGGATCTTCATGGATGTTATACTCCTCCAAAATTGGAACCAGAACATGAACAGCACTTGAAAATGCTACAGCTTCTGTAA 918 42.16 MKGEVQLESSIGQNPSDSDPLLENQNDSSSHGTSDEIKDEDTEAGSIPCCRICLESDAEPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLKVSLFEDNSWRKVKFRLFVARDVLLVFVAVQTLIAAIGGYAYIMDKDGAFRNSFSDGWDRILSRHPIPFYYCIGVLAFFVLLGFFGLILHCSSLNSNDPRVAGCHNCCYGWGILDCFPASMEACFALVIVFVVIFVILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLHGCYTPPKLEPEHEQHLKMLQLL* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23225121 23227841 + Chy2G042250.1 Chy02g01958 221406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g01958 305 Pfam RING-variant domain 50 100 IPR011016 GO:0008270
Chy02g01958 305 MobiDBLite consensus disorder prediction 7 31 - -
Chy02g01958 305 CDD RING_CH-C4HC3_MARCH 50 101 - -
Chy02g01958 305 MobiDBLite consensus disorder prediction 1 42 - -
Chy02g01958 305 ProSiteProfiles Zinc finger RING-CH-type profile. 42 107 IPR011016 GO:0008270
Chy02g01958 305 SUPERFAMILY RING/U-box 48 105 - -
Chy02g01958 305 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 305 - -
Chy02g01958 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 114 IPR013083 -
Chy02g01958 305 SMART ringv_2 49 101 IPR011016 GO:0008270
Chy02g01958 305 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 305 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00694 Chy-Chr2:4195579 Chy02g01958 Chy-Chr2:23225121 9.53E-69 dispersed
Chy02g01958 Chy-Chr2:23225121 Chy04g00782 Chy-Chr4:9990146 2.66E-41 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g01958 - - csv:101220313 625.55