Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02005 ATGCCAAAGTGTAAGAAATTTAGAGGTGTTAGGCAACGTCATTGGGGTTCTTGGGTTTCGGAAATTCGTCACCCTCTATTGAAGAGGAGGATATGGCTTGGGACATTTGAGACAGCGGAGGAAGCGGCCAAAGCGTACGACCAAGCTGCGGTTTTGATGAGTGGTCGGAACGCCAAAACCAATTTCCCTACTTCTTCTTCCAATGGAGAGGCTATCAACAATGTTGTTACAACAGCCAAGGATTCACCAAAGGGTTTGTCTGAAATATTACAAGCTAAGCTCAAGAAATGCTGCCGTACTCCATCACCGTCGATGACATGCTTGAGGCTCGACACTGAGAATTCCAACATTGGTATTTGGCAGAAACGTGCTGGGCAACAGTCGACATCCAACTGGGTTATGACGGTCGAGCTAGGAAACAAGAAGAGGGTAAGTAATGAGAACGAGAGCGAGAACGATAATAATGCAGATTCTCATATGATGGCTGTGGTTGCTTCCGATCATCCGTCTCCGGTGGTGGAAGTGGCGGAGATTCCGTCGGAGTTGGATGAAGAAGAGAAAATTTTAGCATTGCAAATGGTAGAGGAACTGCTTTACATCAACTTTGATCCTGCTGAGCCATTTGAGATTCAACAAGGAAAGGATATTAATTATCTTTAG 660 45.3 MPKCKKFRGVRQRHWGSWVSEIRHPLLKRRIWLGTFETAEEAAKAYDQAAVLMSGRNAKTNFPTSSSNGEAINNVVTTAKDSPKGLSEILQAKLKKCCRTPSPSMTCLRLDTENSNIGIWQKRAGQQSTSNWVMTVELGNKKRVSNENESENDNNADSHMMAVVASDHPSPVVEVAEIPSELDEEEKILALQMVEELLYINFDPAEPFEIQQGKDINYL* 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23956117 23956891 - Chy2G042720.1 Chy02g02005 221453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02005 219 Pfam AP2 domain 6 50 IPR001471 GO:0003700|GO:0006355
Chy02g02005 219 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 203 - -
Chy02g02005 219 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Chy02g02005 219 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Chy02g02005 219 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Chy02g02005 219 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Chy02g02005 219 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Chy02g02005 219 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Chy02g02005 219 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Chy02g02005 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 203 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g02005 Chy05g01314 CCT
Chy02g02005 Chy05g01314 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02005 Chy-Chr2:23956117 Chy07g00348 Chy-Chr7:2841084 6.56E-34 dispersed
Chy02g02005 Chy-Chr2:23956117 Chy04g00364 Chy-Chr4:3212256 1.14E-73 wgd
Chy02g02005 Chy-Chr2:23956117 Chy05g01314 Chy-Chr5:17323731 2.05E-79 wgd
Chy02g02005 Chy-Chr2:23956117 Chy07g01612 Chy-Chr7:20241031 1.56E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17567 PF00847 AP2 7.50E-12 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02005 - - csv:101206565 405.986