Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02104 ATGCAGCCCTGTAGCAGAGAAATGCAATCCCTCAACTCTCTCTTAAACCACTCCCAAATATCTCTCCAAGACCTCCATGCCGACCACCATTTGAATCCTCCACCGCCCCAGATCCCTCCCTCTCACTTCCACCATTTCGATCCCTCCGCCGCTTCCAACGACGACTTCCTCGAACAAATGCTCAACACAATCCCTTCCTGTTCTTGGCCTGATCTCAACCCTTCAAACCCTAAATCCCCTTGGGACCTTAACCCCATTAATAAACCCTCTAGAGATATCTCCGATGATCCTCACCAGAATCACCTCACTGCTACTTCTCCCGCTGCTAAGGCCGCCGTTATGCTTCAACAACAGCTTCTCTTGTCCAGAGGAATGTCTGGTTCTGCCGGAAATGGCGTTGCAGATCATGGCCTCCCCCCTATGCCTCTCTCCCTTGGAAATGCCGACTTGGATCGCTCCCAAAACGACGTCGTTGATGGATCCTGTTTCCGCCCACCAAACTCGGGTGGTTCTCTTCAATCGAATAGTTTCGGAGCTCCGGGAAACGTCATGAATCAAACTCCAGCAGGTGGGTCTGCCGGAGTTTCTCAATCTCAACCAAAGCAGAAGGTCAGAGCTCGTAGAGGCCAAGCTACTGACCCACACAGTATTGCCGAAAGGCTTCGAAGAGAGAGAATTGCAGAGAGAATGAAAGCTCTGCAAGAACTCGTTCCCAATGCAAACAAGACAGATAAAGCTTCGATGCTTGATGAGATCATCGACTACGTTAAATTCCTCCAGCTCCAAGTCAAGGTTCTGAGCATGAGCAGATTGGGGGGTGCAGCTGCTGTGGCTCCTCTAGTCGCTGACGTCTCCTCTGAGGGTGGTGGTGAGTGTATGCAAGGAAGTGGAGCCCAAGCTGGCGGTCGGAATTCCAACAATAATGGCAACGGCGGAAACCAAACGGCCTCGACCAACGATAGCATGACGGTGACAGAGCAGCAAGTGGCAAAGCTAATGGAGAAAGATATGGGATCGGCGATGCAGTATTTGCAAGGGAAAGGGCTTTGTCTTATGCCGATATCTCTAGCAACTGCGATCTCTACGTCCACGTGTCACTCCAGGAATCCCTTGATGAACGGCGGCGGCGGTGGGAGTCAACATCCCGTGATGGGATCCAACGGTGAAGGGCCATCGTCGCCGAGTATGTCGGTGCTGACTGTGCAATCGACGAGCATGGGGAACGGCTCCGTCAAAGACGCCGCCTCCGTATCAAAGCCGTGA 1263 52.57 MQPCSREMQSLNSLLNHSQISLQDLHADHHLNPPPPQIPPSHFHHFDPSAASNDDFLEQMLNTIPSCSWPDLNPSNPKSPWDLNPINKPSRDISDDPHQNHLTATSPAAKAAVMLQQQLLLSRGMSGSAGNGVADHGLPPMPLSLGNADLDRSQNDVVDGSCFRPPNSGGSLQSNSFGAPGNVMNQTPAGGSAGVSQSQPKQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADVSSEGGGECMQGSGAQAGGRNSNNNGNGGNQTASTNDSMTVTEQQVAKLMEKDMGSAMQYLQGKGLCLMPISLATAISTSTCHSRNPLMNGGGGGSQHPVMGSNGEGPSSPSMSVLTVQSTSMGNGSVKDAASVSKP* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25359984 25362726 + Chy2G043710.1 Chy02g02104 221552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02104 420 MobiDBLite consensus disorder prediction 288 323 - -
Chy02g02104 420 PANTHER TRANSCRIPTION FACTOR BHLH69 44 374 - -
Chy02g02104 420 Pfam Helix-loop-helix DNA-binding domain 215 260 IPR011598 GO:0046983
Chy02g02104 420 MobiDBLite consensus disorder prediction 385 420 - -
Chy02g02104 420 SMART finulus 216 265 IPR011598 GO:0046983
Chy02g02104 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 270 IPR036638 GO:0046983
Chy02g02104 420 Gene3D - 204 267 IPR036638 GO:0046983
Chy02g02104 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Chy02g02104 420 MobiDBLite consensus disorder prediction 67 83 - -
Chy02g02104 420 MobiDBLite consensus disorder prediction 67 98 - -
Chy02g02104 420 MobiDBLite consensus disorder prediction 368 420 - -
Chy02g02104 420 MobiDBLite consensus disorder prediction 298 323 - -
Chy02g02104 420 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 44 374 - -
Chy02g02104 420 MobiDBLite consensus disorder prediction 162 213 - -
Chy02g02104 420 MobiDBLite consensus disorder prediction 166 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00128 Chy-Chr1:848554 Chy02g02104 Chy-Chr2:25359984 8.20E-21 dispersed
Chy02g02104 Chy-Chr2:25359984 Chy02g02693 Chy-Chr2:29819597 1.63E-23 dispersed
Chy03g01587 Chy-Chr3:17898667 Chy02g02104 Chy-Chr2:25359984 3.47E-21 dispersed
Chy09g00499 Chy-Chr9:4851121 Chy02g02104 Chy-Chr2:25359984 2.06E-18 dispersed
Chy12g01472 Chy-Chr12:18661897 Chy02g02104 Chy-Chr2:25359984 3.18E-08 dispersed
Chy01g01540 Chy-Chr1:21226903 Chy02g02104 Chy-Chr2:25359984 4.52E-60 transposed
Chy02g01133 Chy-Chr2:8021112 Chy02g02104 Chy-Chr2:25359984 1.62E-34 transposed
Chy02g01134 Chy-Chr2:8027082 Chy02g02104 Chy-Chr2:25359984 5.74E-20 transposed
Chy05g00458 Chy-Chr5:4963075 Chy02g02104 Chy-Chr2:25359984 1.02E-15 transposed
Chy05g01238 Chy-Chr5:16774374 Chy02g02104 Chy-Chr2:25359984 5.71E-114 transposed
Chy02g02104 Chy-Chr2:25359984 Chy05g01006 Chy-Chr5:14729633 3.65E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17571 PF00010 HLH 1.60E-09 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02104 - - csv:101211609 778.089