Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02107 ATGAAACAAGAGTTCTCGAGTATGATTTCACAAGGCAGGACGAATGCAGTTGGAGAAACTTTAGATTCAAGCTGCATCACTTGTCCACTCCCTATTAATGGATGTAGTAGACAAGGAAGGAGTTTAACCTCGAAATTCAAAGGTGTTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGTACATTCAAGTCTGAAAATGAGGCAGCCATGGCATATGATAGTGCTGCTATCAGAATCAGGAGTGGAGATTGTCATAGAAACTTTCCTTGGACAAAATTCACTATTGAAGAGCCTAACTTTCAGAAACTTTACACTACAGAAACTTTGCTTAATATGATAAAGGACGGTTCTTACAGAACTAAATTTTCTGAGTATTTAAGGGATCGTTCTGAAAGCACACAAACGTCAGCCAGTCCCTCCACAGAAAAGGCGCATAACAATGGAGGGACATCTATTAAGCAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATACCAAAGAAGTACGCTGTTAAGTACTTCCCTCGAATATCAGCTAGCACAACAGAAAATGTGGAACACATTGATGATGATCGCGACTTGCAGCTAGTATTTTTTGACAAAATGATGAGACAATGGAAATTTCGCTACTGTTACTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGTGGTTGGAATCGCTTTGTGAAGGAAAAACAACTGAAAGCTAACGACACAATAGCTTTCTACTTGTGTGAAGCAGCAAAGTCAAGTGATTCTAAAACTACATTTTGTGTGGTAGATGTTAAAAACCGTGACAACAGTGGTGGCCTGGTTGAGAATGAAACCACATGTAGCGAATTGCAGCTCAATTTGAGGCATGGAGAAGTTGAGGAATCGGTCTCGCCTAAGCACATAGACGATGAACTGAAAGATGAAGGTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCATATTAAGTGA 1020 40.88 MKQEFSSMISQGRTNAVGETLDSSCITCPLPINGCSRQGRSLTSKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRSGDCHRNFPWTKFTIEEPNFQKLYTTETLLNMIKDGSYRTKFSEYLRDRSESTQTSASPSTEKAHNNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPRISASTTENVEHIDDDRDLQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDTIAFYLCEAAKSSDSKTTFCVVDVKNRDNSGGLVENETTCSELQLNLRHGEVEESVSPKHIDDELKDEGEVKGFKLFGVHIK* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25405981 25407000 + Chy2G043740.1 Chy02g02107 221555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02107 339 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Chy02g02107 339 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Chy02g02107 339 SMART B3_2 167 282 IPR003340 GO:0003677
Chy02g02107 339 PANTHER DNA-BINDING PROTEIN RAV1 1 338 - -
Chy02g02107 339 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 338 IPR044800 GO:0003700
Chy02g02107 339 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Chy02g02107 339 MobiDBLite consensus disorder prediction 140 159 - -
Chy02g02107 339 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
Chy02g02107 339 ProSiteProfiles B3 DNA-binding domain profile. 167 282 IPR003340 GO:0003677
Chy02g02107 339 CDD B3_DNA 166 278 IPR003340 GO:0003677
Chy02g02107 339 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Chy02g02107 339 Gene3D - 162 288 IPR015300 -
Chy02g02107 339 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677
Chy02g02107 339 Pfam AP2 domain 44 91 IPR001471 GO:0003700|GO:0006355
Chy02g02107 339 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01404 Chy-Chr2:10923539 Chy02g02107 Chy-Chr2:25405981 1.65E-106 dispersed
Chy02g02107 Chy-Chr2:25405981 Chy10g01117 Chy-Chr10:16208218 5.52E-56 dispersed
Chy02g02107 Chy-Chr2:25405981 Chy09g01354 Chy-Chr9:15378053 3.53E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17572 PF02362 B3 4.20E-24 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02107 K09287 - csv:101212246 685.256