Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02108 ATGGCGGAAAAGGATAGAGATGGTAGTTCTGGTGTGCTCCATGGGAAGTACGAGTTAGGTCGGCTTCTAGGGCATGGAACTTTTGCGAAGGTTTACCATGCCCGGAACTTGCAGACTGGGACGAGTATGGCGATGAAGGTCGTTGGGAAGGAGAAGGTCATAAAAGTAGGGATGATGGAGCAGATCAAGAGGGAGATCTCTGTGATGAAGATGGTGAAACATCCGAATATCGTTGAGCTTCATGAAGTTATGGCGAGCAAATCGAAGATTTATTTCGCTATGGAGCTTGTTCGAGGTGGAGAATTGTTCTCCAAAATTTCCAAAGGTCGATTGAGAGAAGATGTCGCTAGGGTTTACTTTCAGCAGCTAATTTCCGCGATCGATTTCTGTCACAGTCGTGGAGTGTACCATCGGGATCTCAAACCGGAGAATCTTCTTCTCGACGACGACGGAAACCTTAAGGTAACTGATTTTGGACTAAGCGCATTTTCCGAGCACTTGAAACAGGATGGATTATTGCACACAACTTGTGGTACACCGGCGTATGTTGCCCCGGAAGTTATCGGGAAGAAAGGATACAACGGCGCCAAAGCCGATCTGTGGTCTTGTGGAGTCATCCTTTACGTTCTCCTTGCCGGATTTCTTCCATTTCAAGACGACAATATTGTATCCATGTACAGGAAGATTTACAGAGGAGATTTCAAGTGTCCGCCGTGGTTCTCACCGGAAGCCCGACGACTAGTCACCAAACTCCTCGATCCAAATCCGAACACCAGAATCCTAACTTCGAAGATAATGGAATCGTCCTGGTTTAGGAAATCTATACCAAAAACTGTGGTGACAAAAGAGGAACAGGAATTCAATGAGAGCAACGAGAAATTAAAGCAATCCGAAACTTTAAATGCCTTCCATATAATTTCTTTATCAGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAAAAGAGGGAAGAAAAAGAGGAGCTGAGGTTTGCAACGACGAGGCCGGCAAGCAGTGTGATATCGAAGCTGGAGGAGGTGGCCAAGGCAGGGAAATTCAGCGTCAAAAAGAGTGAATCAAGGGTCAGATTGCAGGGCCAGGAGTGTGGAAGGAAAGGGAAACTGTCAGTGGCGGCTGAGATCTTCGCAGTTACACCGTCGTTTCTGGTGGTGGAGGTGAAGAAAGATCACGGTGACACACTTGAATACAATCAGTTCTGCAGCAAAGAGCTTCGGCCGGCGCTGAAAGATATCGTGTGGACATCACCGACGGAAAATTCCATGCCGGCTTGA 1293 47.18 MAEKDRDGSSGVLHGKYELGRLLGHGTFAKVYHARNLQTGTSMAMKVVGKEKVIKVGMMEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKISKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDDDGNLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYNGAKADLWSCGVILYVLLAGFLPFQDDNIVSMYRKIYRGDFKCPPWFSPEARRLVTKLLDPNPNTRILTSKIMESSWFRKSIPKTVVTKEEQEFNESNEKLKQSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATTRPASSVISKLEEVAKAGKFSVKKSESRVRLQGQECGRKGKLSVAAEIFAVTPSFLVVEVKKDHGDTLEYNQFCSKELRPALKDIVWTSPTENSMPA* 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25413498 25414790 - Chy2G043750.1 Chy02g02108 221556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02108 430 Pfam NAF domain 298 357 IPR004041 GO:0007165
Chy02g02108 430 Gene3D Transferase(Phosphotransferase) domain 1 99 277 - -
Chy02g02108 430 ProSiteProfiles Protein kinase domain profile. 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g02108 430 CDD STKc_SnRK3 16 270 - -
Chy02g02108 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Chy02g02108 430 ProSitePatterns Protein kinases ATP-binding region signature. 23 50 IPR017441 GO:0005524
Chy02g02108 430 ProSiteProfiles NAF domain profile. 295 319 IPR018451 GO:0007165
Chy02g02108 430 Gene3D Kinase associated domain 1, KA1 295 421 - -
Chy02g02108 430 Pfam Protein kinase domain 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g02108 430 Gene3D Phosphorylase Kinase; domain 1 14 98 - -
Chy02g02108 430 CDD CIPK_C 301 416 - -
Chy02g02108 430 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 428 - -
Chy02g02108 430 Coils Coil 280 300 - -
Chy02g02108 430 SUPERFAMILY Protein kinase-like (PK-like) 13 287 IPR011009 -
Chy02g02108 430 SMART serkin_6 17 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy02g02108 430 PANTHER - 8 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02108 Chy-Chr2:25413498 Chy12g00083 Chy-Chr12:837203 0 dispersed
Chy05g01236 Chy-Chr5:16762980 Chy02g02108 Chy-Chr2:25413498 0 transposed
Chy02g02108 Chy-Chr2:25413498 Chy07g00333 Chy-Chr7:2713983 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71089 PF00069 Pkinase 4.20E-72 CL0016 Chy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02108 - K07198 csv:101211847 841.647