Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02115 ATGAGGGAGACGAATGGAAATAGAATGTTGTTTCGAGATTCTGTATCTTTCACAGTCTTCAATTCTCGTGCAATCAAGTTAAATAAGCTAGATGACAGAGAAGGCTGTAAACTTGTTCTTACAGGAAACGTGTCACTGCAACAGTGCATAATTTTTGATTGCTGTTTTACCACGGATGCTTGGAAGGAAGAGAACTATGAAGTTTACTTAGGTGGAATAGTTGCTCAACTCCGAGAACATTTAGCAGATGCATCATTCTTGGTATTCAATTTTAGGAGATTAGAGATGCAGAGTCAGATGGGTGATATCTTATCTAAGTATGATATGACCATAATGGACTACCCTCAGCAGTACGAGGGCTGCCCAGTTCTGACGATGGAAGTGGTTCACCATTTTTTAAGATCATGTGAGAGTTGGCTTTCCCTTGGGCAGAATAATGTTTTGCTAATGCATTGTGAACGTGGTGGTTGGCCAGTTTTAGCTTTCATGCTTTCAGCTCTCTTGATTTATAGAAAACAATATAGTGGCGAACAAAGAACATTGGACATGGTTTATAGGCAGGCACCTCGTGAGCTTTTACATTTTTTGTCTCCTATGAATCCGATTCCATCTCAATTAAGGTATCTGCAATACGTTGCGAGGAGGAATGTAGCCTTAGAATGGCCTCCTATGGACAGAGCTCTCACTTTGGATTGTATCATTTTGAGGTTTATTCCAAATTTTGATGGGGAGGGTGGTTGCCGTCCAATATTTCGAATATATGGACAAGATCCTCTGCTGGTCAGTGATCGAACTCCTAAAGTTCTTTATTCAACTCCAAAAAGAAGCAAAAATGTCCGAGCTTTCAAACAGGCAGAGTCTGAACTGGTTAAGATTGATGTTAATTGTCATATTCAAGGTGATGTTGTTCTTGAGTGCATCACCTTGCATGACGACATGGAATTTGAAGAGATGATGTTCAGAGCAATGTTTAATACTGCTTTTATTCGCTCTAATATTTTAATTCTCAACCGTGAAGAGATTGACACGTTGTGGAATGCTAAAGATAAATTTCCAAAAGACTTCCGAGCAGAGATTCTTTTCTCTGAGATGGATGCTGGAACTCGTACTGTTGCAAATGATGTACTTTGCATCGAGGAAGAAGGTCTTCCCATGGAAGCATTTGCTAAAGTGCAAGAGATCTTTAGTCATGTGGATTGGTTAGATCCCAAAGCAGATGTTGCCCTTAATGTGCTCCATCAGATGAATGCCTTAAACATAGCCCAAGAGAAGCCAGACAATAATTCTCTTTGGAGTACGCAAGTTAGTTCTTTACTTCAGTGTGCAAGTCCCAGAAAACTTCCACAGTTCACATTGGAGAACAAAAGTAAATTCCTAGAGAAGGAAGGATCTAGTCCAACATCTAAATTTTCTCCGGATGCTGCTAAAACCAAACAAAACAATGAATCCAATTCAGTATTCCAACGGGTGCCTCAATCTCCAGACCCTTTTCCACTCACCTTCGACATGTTGCAAGATTCCCCAAACTCAGAGAGAAGTGATAGGACCTCATACAGTGCTTCGGTTGGAAGCCACTCATTTATTGATTCTGAAGGAGAAATAGATGTTTCTCATCTGAAAACTGCATCTTCATCTTTTCGGGATGCAACATTGGATGTTTCTCTAGCACCTGAATCTCCTCAGACTAAAAATTTATATACAGAAACAACCATACCACCACCTCCTCCTCTCCCACAACTTTCCACTGATATTTATGCTGCAAATTCCCTACCTCCTCCTCACTCTACATCAACTGAATCACTACTTCAGTCTAATAACTTTTCAAGTCTACGACCAAATAGAGCTTTACTCACTGAGGAAATAGAAATCTATTCAAAGGATCAAAATCAGTTATCAGCCATCATCCCTCCCCTGTCTGTAACCTCTACAATTAGTTCCTCAGTACAGTCTTCTCCACCACCTCCTCCACCACCTCCTTCAACACCTCCTTTGAAGGATACCATAGCTGTTAGAGTTAAAGCTTCTTTGACAACACCCCCTTTTCCTTCTACATTAGCTTCTCATCCTACAATTGCATCCTCTGTTCCTCAACCACCACCTCCTCCTCCTCCTTCCACATCCACTGTAACTCATAAAATTTCATCTCCAATCCCTTCACCTCCACCACCACCGCCTACTCCTTCTCCTCCTCCTCCTCCTCCAATAGCCATTACAAATCCTAAAATCTCCTCTCCAGTGCCTCCACCACCGCCTCCTCTTCCTATGACTTCCAAACAGGTTGAAAGTACTACAACACCCCCATCTATTCCTCCTCCACCACCACCACCTATTCCTATGACATCCAGGCAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCTAGACAGGTTGGAAGTACTTCAACATCTTCGCCTGTTCCTCCACCACCACCACCTCTTCCATCTAGACTGGTTGGAAGTACTTCAACATCTTCACATGTCCCCCCTCCTCCACCACCGCCTGCTTCCACCAAAGGCTCCCCTTCATCTGTTCCTTCTGCTCCCCCTCCTCCTACCCTTTCTGGGAGAGGGCCTTCAAAATCAGGTGAACTGTCTGGTTCTCTTCTTGGAAATGGTTCATCTAGGTCTTCCTCTCCTGTGCCACCAAGTGGTTCTCCATCAGGTATAAAGGGACGGACTTTGTCACGCACCATAAGTTCAAGAACACATATAACCAAGAAATTGAAGCCACTGCATTGGTTAAAGTTATCTAAAGCAGTGCAAGGAAGCTTATGGGCTGAAGCCCAAAAAACTGGTGAAGCTGCCAGGGCACCGGAGATTGACATGTCAGAGCTTGAAAGCCTTTTCTCAGCAGCAGTTCCTGCTCCTGATCAGCTCCAAAAGTCGAGTGGACGCGGTTCAGTTGGCAATAAGCCTGAGAAAGTACAACTGATTGATCACAGACGTGCTTACAATTGTGAAATTATGCTTTCAAAGGTCAAGGTGCCTTTGCATGATTTAATGAGTTCTGTGCTTGACCTTGAAGATTCAGCTCTGGATATCGATCAGGTCGAGAATCTTATTAAGTTTTGTCCGACAAAGGAGGAAATGGATTTACTTAAGGGGTACACTGGAGAAAAGGAGAAGCTCGGTAAATGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCTCGTGCTGAATCTAAGCTTCGAGTTTTCTCATTCAAAATACAGTTCAGCTCTCAGGTTGCGGACCTCAAAAAAAGCTTGAATTTTGTTAACTCTGCTGCAGAAGAGATAAAAAGTTCAGTGAAGTTGAAGAGAATCATGCAGACAATACTATCTCTTGGAAATGCCTTAAACCAGGGAACAGCAAGGGGCTCTGCTATAGGATTTAGGCTGGATAGCCTTCTTAAACTGACAGAAACACGTGCACGAAACAACAAGATGACACTAATGCATTATCTTTGCAAGATACTTGCTGACAAACTGCCAGAAGTTTTGGATTTTTCTAAAGATCTTGCAAACTTGGAGCCTGCATCAAAGGTACAATTGAAGGTTTTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTTCAAGAATTGTCTACATCTGAAAATGATGGCCCAATATCCAATAATTTCAGAATGGTTCTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGCGAACTTTAGCTTCTCTGTACTCTACTGTGGGTAGAAATGTAGATTCTTTGATTCTTTATTTTGGTGAAGATCCAGCTCGCTGCCCCTTTGAACAAGTTATGTCAACCTTATGCAACTTCGTGAGAATGTTTAACCGAGCCCATGAGGAAAACTGCAAGCAGATTGAGCTTGAAATGAAGAAAGCAACTGAAGGTGAAAAATCGAAGACGGGGCACTTGCACAAGAGGACAAGGACAAAACAGTTATCAAACTCCCAGATTGAGATTGGCAACGTCAAGTAA 3987 42.54 MRETNGNRMLFRDSVSFTVFNSRAIKLNKLDDREGCKLVLTGNVSLQQCIIFDCCFTTDAWKEENYEVYLGGIVAQLREHLADASFLVFNFRRLEMQSQMGDILSKYDMTIMDYPQQYEGCPVLTMEVVHHFLRSCESWLSLGQNNVLLMHCERGGWPVLAFMLSALLIYRKQYSGEQRTLDMVYRQAPRELLHFLSPMNPIPSQLRYLQYVARRNVALEWPPMDRALTLDCIILRFIPNFDGEGGCRPIFRIYGQDPLLVSDRTPKVLYSTPKRSKNVRAFKQAESELVKIDVNCHIQGDVVLECITLHDDMEFEEMMFRAMFNTAFIRSNILILNREEIDTLWNAKDKFPKDFRAEILFSEMDAGTRTVANDVLCIEEEGLPMEAFAKVQEIFSHVDWLDPKADVALNVLHQMNALNIAQEKPDNNSLWSTQVSSLLQCASPRKLPQFTLENKSKFLEKEGSSPTSKFSPDAAKTKQNNESNSVFQRVPQSPDPFPLTFDMLQDSPNSERSDRTSYSASVGSHSFIDSEGEIDVSHLKTASSSFRDATLDVSLAPESPQTKNLYTETTIPPPPPLPQLSTDIYAANSLPPPHSTSTESLLQSNNFSSLRPNRALLTEEIEIYSKDQNQLSAIIPPLSVTSTISSSVQSSPPPPPPPPSTPPLKDTIAVRVKASLTTPPFPSTLASHPTIASSVPQPPPPPPPSTSTVTHKISSPIPSPPPPPPTPSPPPPPPIAITNPKISSPVPPPPPPLPMTSKQVESTTTPPSIPPPPPPPIPMTSRQVGSTSTSSPVPPPPPPLPSRQVGSTSTSSPVPPPPPPLPSRLVGSTSTSSHVPPPPPPPASTKGSPSSVPSAPPPPTLSGRGPSKSGELSGSLLGNGSSRSSSPVPPSGSPSGIKGRTLSRTISSRTHITKKLKPLHWLKLSKAVQGSLWAEAQKTGEAARAPEIDMSELESLFSAAVPAPDQLQKSSGRGSVGNKPEKVQLIDHRRAYNCEIMLSKVKVPLHDLMSSVLDLEDSALDIDQVENLIKFCPTKEEMDLLKGYTGEKEKLGKCEQFFLELMQVPRAESKLRVFSFKIQFSSQVADLKKSLNFVNSAAEEIKSSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKILADKLPEVLDFSKDLANLEPASKVQLKVLAEEMQAISKGLEKVVQELSTSENDGPISNNFRMVLKEFLRFAEAEVRTLASLYSTVGRNVDSLILYFGEDPARCPFEQVMSTLCNFVRMFNRAHEENCKQIELEMKKATEGEKSKTGHLHKRTRTKQLSNSQIEIGNVK* 1329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25463736 25473934 - Chy2G043820.1 Chy02g02115 221563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02115 1328 MobiDBLite consensus disorder prediction 679 909 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 649 664 - -
Chy02g02115 1328 Coils Coil 1280 1300 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 1298 1328 - -
Chy02g02115 1328 SMART it6_source 567 1324 IPR015425 -
Chy02g02115 1328 Pfam Formin Homology 2 Domain 913 1280 IPR015425 -
Chy02g02115 1328 Gene3D Formin, FH2 domain 904 1290 IPR042201 -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 503 518 - -
Chy02g02115 1328 PANTHER FORMIN-J 39 1307 - -
Chy02g02115 1328 Gene3D Protein tyrosine phosphatase superfamily 46 225 IPR029021 -
Chy02g02115 1328 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 227 364 IPR035892 -
Chy02g02115 1328 SUPERFAMILY Formin homology 2 domain (FH2 domain) 980 1298 - -
Chy02g02115 1328 SMART PTEN_C2_2 223 363 IPR014020 -
Chy02g02115 1328 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 83 212 IPR029021 -
Chy02g02115 1328 Pfam C2 domain of PTEN tumour-suppressor protein 225 363 IPR014020 -
Chy02g02115 1328 ProSiteProfiles Formin homology-2 (FH2) domain profile. 906 1305 IPR015425 -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 458 518 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 765 780 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 693 707 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 866 909 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 643 665 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 833 863 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 715 756 - -
Chy02g02115 1328 MobiDBLite consensus disorder prediction 463 491 - -
Chy02g02115 1328 Gene3D - 226 366 - -
Chy02g02115 1328 ProSiteProfiles C2 tensin-type domain profile. 225 364 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02115 - - - csv:101221713 2283.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02115 Chy-Chr2:25463736 Chy12g01523 Chy-Chr12:18995713 1.03E-121 dispersed
Chy04g00803 Chy-Chr4:10422737 Chy02g02115 Chy-Chr2:25463736 1.81E-141 transposed
Chy11g00235 Chy-Chr11:2211403 Chy02g02115 Chy-Chr2:25463736 2.79E-33 transposed
Chy02g02115 Chy-Chr2:25463736 Chy07g00331 Chy-Chr7:2686037 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy01g01195 . 4 277 Protein tyrosine phosphatase (PTP) family AT1G71860 67.3 2.4e-108 389.0
Chy02g02701 . 11 908 Protein tyrosine phosphatase (PTP) family AT5G23720 64.2 0.0e+00 1075.5
Chy11g01429 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 57.9 8.0e-41 163.7
Chy05g00525 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.0e-71 263.8
Chy10g01271 . 113 393 Protein tyrosine phosphatase (PTP) family AT3G52180 69.0 6.4e-115 410.6
Chy10g00338 . 29 283 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 1.9e-111 399.1
Chy04g01457 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 2.0e-203 705.3
Chy11g00950 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 5.8e-75 277.7
Chy05g00519 . 43 240 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 8.2e-69 257.3
Chy02g01674 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 1.8e-55 213.0
Chy06g02072 . 14 348 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 1.3e-101 366.7
Chy05g01416 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.6e-80 296.6
Chy05g01416 . 28 202 Protein tyrosine phosphatase (PTP) family AT5G56610 52.6 7.8e-45 177.2
Chy06g02072 . 51 226 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 1.0e-44 176.8
Chy11g00950 . 44 214 Protein tyrosine phosphatase (PTP) family AT4G03960 76.6 2.5e-78 288.5
Chy05g00519 . 41 239 Protein tyrosine phosphatase (PTP) family AT4G03960 61.3 2.2e-66 248.8
Chy02g01674 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 5.0e-58 221.1
Chy02g01674 . 1 201 Protein tyrosine phosphatase (PTP) family AT3G02800 68.6 8.1e-80 293.5
Chy11g00950 . 44 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.6 4.1e-55 211.5
Chy10g00579 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 64.1 2.2e-61 234.2
Chy04g01571 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 66.2 3.3e-157 551.6
Chy01g00080 . 33 613 Protein tyrosine phosphatase (PTP) family AT3G19420 65.8 2.4e-220 761.9
Chy02g00892 . 31 608 Protein tyrosine phosphatase (PTP) family AT3G19420 61.9 4.6e-195 677.9
Chy02g00892 . 33 608 Protein tyrosine phosphatase (PTP) family AT3G50110 62.4 2.6e-193 672.2
Chy01g00080 . 6 613 Protein tyrosine phosphatase (PTP) family AT3G50110 57.3 1.2e-182 636.7
Chy02g02115 . 51 1308 Protein tyrosine phosphatase (PTP) family AT5G58160 53.4 4.6e-306 1047.7
Chy02g02475 CCT 1 376 Protein tyrosine phosphatase (PTP) family AT5G58160 63.3 4.8e-138 489.6
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT3G10550 68.5 0.0e+00 1177.5
Chy03g00887 . 1 860 Protein tyrosine phosphatase (PTP) family AT5G04540 65.7 0.0e+00 1114.0
Chy11g00890 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.2 5.2e-71 264.6
Chy06g02132 . 27 311 Protein tyrosine phosphatase (PTP) family AT2G35320 64.2 2.5e-109 392.1
Chy08g00661 . 1 673 Protein tyrosine phosphatase (PTP) family AT3G09100 68.7 9.0e-277 949.5
Chy08g00661 . 5 673 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 3.4e-252 867.8
Chy08g00661 . 86 673 Protein tyrosine phosphatase (PTP) family AT5G28210 56.4 4.9e-184 641.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009302 0 2 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 2 0 33