Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02123 ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCTGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGACATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTAATTTCTTTGTCACTAACTTATTATGCTCTACTTATCGAAGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAGTTAA 525 44.19 MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVISLSLTYYALLIEVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS* 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25529601 25532315 + Chy2G043900.1 Chy02g02123 221571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02123 174 PANTHER BNAA07G09420D PROTEIN 1 170 - -
Chy02g02123 174 SUPERFAMILY Nucleic acid-binding proteins 100 170 IPR012340 -
Chy02g02123 174 SMART eIF_5a_2 99 168 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy02g02123 174 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 99 168 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy02g02123 174 TIGRFAM eIF_5A: translation elongation factor IF5A 18 167 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy02g02123 174 PIRSF Transl_init_eIF5A 1 171 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy02g02123 174 Gene3D - 1 84 IPR014722 -
Chy02g02123 174 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 170 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Chy02g02123 174 CDD S1_eIF5A 100 170 - -
Chy02g02123 174 Gene3D - 100 173 IPR012340 -
Chy02g02123 174 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Chy02g02123 174 SUPERFAMILY Translation proteins SH3-like domain 15 85 IPR008991 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02123 Chy-Chr2:25529601 Chy10g01040 Chy-Chr10:15654670 1.74E-103 dispersed
Chy02g02123 Chy-Chr2:25529601 Chy07g00329 Chy-Chr7:2671510 5.00E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02123 K03263 - csv:101210204 317.775