Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02178 ATGTTGATAACATTCACAGAAGCTGTTGCAGCTTCTTTTTCTTCTTCGCCCCTTTGCTTCACTCTCTCCACTCAATCTCTTACCAATTCTGACCGCTTTCCAAGACCTTCAATTTCACTCACCCGTGCTTCCTTCTCTGTTCCAGGCAAGCCCACTTCCACCAAATCCTGGAACCTTCGCCTCGTTTCCAACAGTTCTGAGAGCTCAGTTTTTGATCCCTTGGGCATCCGTCCTGATCTTTCTTCCGAATTAAGTAGTAGATGGGAAAACGTTCTTGGCTATTTTGGCCAAACATTTAACAGTGCTTCAAGCACAAAAAAAGACAAATCTCCGTCAGCTCGTGGATTGGCAGCTGCAATCGAGGACAGTTCCATTGACATAGGGGATTTCTTCAAAGGTCCGTTGCCTGGAAAATTCCTACAGCTGTTGGGCTATTTAGCTCTTTCAAGGCTTGGAATCTATATCCCTCTTGGTGGAGTGAACCGAGAGGCTTTTGTTGGGAACTTGGATCAGAACAGCTTATTGAGCACTTTAGATTCATTTTCTGGAGGAGGCATTGGTAGGCTAGGGATATGCTCCCTAGGCATTGTTCCATTTATCAATGCACAAATTGTCTTCCAGCTTCTTGCTCAAATTTATCCAAAATTGCAAGACCTTCAGAAAAGAGAAGGTGAAGCAGGGCGAAAGAAAATTCTGCAATATACTCGATATGCCTCAGTTGGATTTGCAATCGTACAAGCAATTGGCCAAGTTCTATACCTTCGCCCCTATGTTAATGATTTTAGTACAGAATGGGTGCTCTCTTCTGTTACTTTATTGACACTTGGCTCAGTCATAACAACGTACATAGGGGAACGGATCACAGACCTAAAGCTAGGAAATGGGACATCTCTTTTAATATTCACCAGCATCATCTCCTATTTACCAGCATCCTTTGGAAGGACCACTGCACAGGCATTCCAGGATGGTAATTATGTTGGATTGGTTGCTATCATAATCTCCTTCTTTCTATTGGTACTTGGAATTGTATATGTTCAGGAAGCAGAAAGGAAAATCCCCCTCAATTATGCTTCAAGATACACAAGCAGAGGTGGAGGACTTCAGAAATCTGCTTACCTGCCCTTCAAGGTTAATAGTTCTGGTGTAATGCCAATCATTTTCTCGACATCAACGTTAGCCCTTCCAGGTACTCTGGCTCGCTTCACAGGGCTATCGGTCCTAAAGAAGGCTGCACTTGCTTTAAATCCAGGAGGTTCGTTCTATCTGCCAACCAACATCCTTTTGATAGCCTTCTTCAACTATTACTACACGTTCCTACAGTTGGATCCCGATGATGTGAGTGAGCAATTGAAGCGACAGGGTGCTTCAATTCCCCTCGTCCGCCCAGGAAAAAGTACAGCTTCATTTCTGAAAGCGGTTCTAAGCCGGATTTCAGTACTTGGTTCAGCCTTCTTGGCAATCCTTGCTGCTGGGCCTGCGGTGATTGAACAGACAACACATTTGACAGCATTTCGAGGATTTGCAGGAACCTCTGTTCTTATTCTTGTTGGTTGTGCAACAGACACTGCCAGAAAGGTACAAGCTGAGATAATCTCCCAGAAGTACAAGAATATAGAGTTCTATGACATTGATAGGTATAATCCTTGA 1647 43.84 MLITFTEAVAASFSSSPLCFTLSTQSLTNSDRFPRPSISLTRASFSVPGKPTSTKSWNLRLVSNSSESSVFDPLGIRPDLSSELSSRWENVLGYFGQTFNSASSTKKDKSPSARGLAAAIEDSSIDIGDFFKGPLPGKFLQLLGYLALSRLGIYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGICSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSTEWVLSSVTLLTLGSVITTYIGERITDLKLGNGTSLLIFTSIISYLPASFGRTTAQAFQDGNYVGLVAIIISFFLLVLGIVYVQEAERKIPLNYASRYTSRGGGLQKSAYLPFKVNSSGVMPIIFSTSTLALPGTLARFTGLSVLKKAALALNPGGSFYLPTNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGKSTASFLKAVLSRISVLGSAFLAILAAGPAVIEQTTHLTAFRGFAGTSVLILVGCATDTARKVQAEIISQKYKNIEFYDIDRYNP* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25982302 25986162 - Chy2G044450.1 Chy02g02178 221626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02178 548 ProSitePatterns Protein secY signature 2. 282 299 IPR030659 -
Chy02g02178 548 Pfam SecY 191 522 IPR002208 GO:0015031|GO:0016020
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 231 254 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 419 441 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 189 209 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 263 288 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 289 312 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 380 399 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 508 526 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 139 157 - -
Chy02g02178 548 PRINTS Preprotein translocase SecY subunit signature 474 492 - -
Chy02g02178 548 Gene3D SecY subunit domain 130 535 IPR023201 -
Chy02g02178 548 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 56 544 - -
Chy02g02178 548 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 56 544 IPR002208 GO:0015031|GO:0016020
Chy02g02178 548 SUPERFAMILY Preprotein translocase SecY subunit 131 529 IPR023201 -
Chy02g02178 548 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 138 535 IPR002208 GO:0015031|GO:0016020
Chy02g02178 548 Hamap Protein translocase subunit SecY [secY]. 127 539 IPR026593 -
Chy02g02178 548 ProSitePatterns Protein secY signature 1. 190 209 IPR030659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02178 Chy-Chr2:25982302 Chy05g00460 Chy-Chr5:4984874 3.87E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02178 K10956 - csv:101222431 1016.14