Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02192 ATGGGAATTGACGCTGACAGTGTCGTGAAGGGTTTCGGCGGCGGATGGGGCGTCGTCACTAAACCTTGCGATTCCTGCAAGACTGGCCCTGCTGCTGTCTATTGTCGACCGGACTCGGCTTTTCTCTGCCTTTCCTGCGACGCCAAAATTCATTGCGCCAACAAGCTCGCCTCGCGCCACGAGCGTGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCTGTGGTCATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACTTGTGATGCCGATATTCACTCTGCTAACCCATTAGCCCGTCGCCACGAGCGTGTCCCTGTCGAGCCTTTTTTCGACTCGACGGAATCAGTTGTTAAATCCTCCTCTGTTTTAAATTTTCTGGTTCCTAATGAAACTACTGCCCCTGTTTGTGATGGTGCCCATCACCACGAGGAAGTGGAGGTTTCCTCCTGGCTTTTATCCAACTCGTTTTTCAACTCTAAGCTCGTCGACGGCCCTGAAATCAAACCTCCCAGCGGTGATCATTTGTTCTTCAACGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCCCTACGCCGGTTATTAACCAGACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGTAGATCCAAGCTCAATTCATTCGGCTATCAGCCTCAATCCCTAAGTCACAGTGTTTCTTCTTCCTCCTTAGAAGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGATGGGTCAAAACGTGAGTACTGGTGCGGATTCAGGGCTACCGTTGTCAGGATCCGGAAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCAGAAACCCGGCCGAGAATCAAAGGCCGGTTCGCAAAACGAACTGATATGCTATCAGAGGTTGATGAAATCTATGGCTCAGCTGCTTCATCTGTGTTCCTGACAGACGCTCAATATGGCGTTGTACCAACGTTTTGA 1128 49.38 MGIDADSVVKGFGGGWGVVTKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSTESVVKSSSVLNFLVPNETTAPVCDGAHHHEEVEVSSWLLSNSFFNSKLVDGPEIKPPSGDHLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLPTPVINQTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPMGQNVSTGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDAQYGVVPTF* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26089518 26090740 - Chy2G044590.1 Chy02g02192 221640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02192 375 CDD Bbox1_BBX-like 22 65 - -
Chy02g02192 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 375 - -
Chy02g02192 375 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Chy02g02192 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 375 IPR045281 GO:0009909
Chy02g02192 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Chy02g02192 375 CDD Bbox1_BBX-like 66 108 - -
Chy02g02192 375 Pfam CCT motif 302 344 IPR010402 GO:0005515
Chy02g02192 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Chy02g02192 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Chy02g02192 375 SMART bboxneu5 66 108 IPR000315 GO:0008270
Chy02g02192 375 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02192 - - - csv:101214816 739.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02192 Chy-Chr2:26089518 Chy03g01067 Chy-Chr3:14104800 3.04E-105 dispersed
Chy10g01148 Chy-Chr10:16403867 Chy02g02192 Chy-Chr2:26089518 1.93E-07 dispersed
Chy11g00733 Chy-Chr11:9809676 Chy02g02192 Chy-Chr2:26089518 2.56E-08 dispersed
Chy02g02191 Chy-Chr2:26080814 Chy02g02192 Chy-Chr2:26089518 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01067 . 6 328 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 2.1e-38 156.8
Chy03g01067 . 1 320 C2C2-CO-like Transcription Factor Family AT5G24930 63.2 4.5e-81 298.5
Chy02g02192 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 5.3e-58 221.9
Chy02g02192 . 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.1 1.0e-69 260.8
Chy02g02191 CCT 15 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.6 3.1e-58 222.6
Chy03g01067 . 2 331 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.6e-52 201.8
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 7.1e-90 327.8
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 6.0e-89 324.7
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT1G75540 65.9 2.4e-41 166.4
Chy07g00978 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.5 1.1e-78 290.4
Chy07g01229 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 60.9 3.4e-55 211.5
Chy02g00591 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Chy07g01229 . 1 201 C2C2-CO-like Transcription Factor Family AT4G38960 60.2 2.3e-57 218.8
Chy02g00591 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT4G39070 67.7 2.6e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17577 PF00643 zf-B_box 6.80E-07 No_clan Chy TF