Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy02g02192 ATGGGAATTGACGCTGACAGTGTCGTGAAGGGTTTCGGCGGCGGATGGGGCGTCGTCACTAAACCTTGCGATTCCTGCAAGACTGGCCCTGCTGCTGTCTATTGTCGACCGGACTCGGCTTTTCTCTGCCTTTCCTGCGACGCCAAAATTCATTGCGCCAACAAGCTCGCCTCGCGCCACGAGCGTGTCTGGATGTGCGAGGTCTGTGAACAAGCTCCTGCTGTGGTCATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACTTGTGATGCCGATATTCACTCTGCTAACCCATTAGCCCGTCGCCACGAGCGTGTCCCTGTCGAGCCTTTTTTCGACTCGACGGAATCAGTTGTTAAATCCTCCTCTGTTTTAAATTTTCTGGTTCCTAATGAAACTACTGCCCCTGTTTGTGATGGTGCCCATCACCACGAGGAAGTGGAGGTTTCCTCCTGGCTTTTATCCAACTCGTTTTTCAACTCTAAGCTCGTCGACGGCCCTGAAATCAAACCTCCCAGCGGTGATCATTTGTTCTTCAACGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCCCTACGCCGGTTATTAACCAGACCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGTAGATCCAAGCTCAATTCATTCGGCTATCAGCCTCAATCCCTAAGTCACAGTGTTTCTTCTTCCTCCTTAGAAGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGACATATCATACCCGATGGGTCAAAACGTGAGTACTGGTGCGGATTCAGGGCTACCGTTGTCAGGATCCGGAAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCTTATGCAGAAACCCGGCCGAGAATCAAAGGCCGGTTCGCAAAACGAACTGATATGCTATCAGAGGTTGATGAAATCTATGGCTCAGCTGCTTCATCTGTGTTCCTGACAGACGCTCAATATGGCGTTGTACCAACGTTTTGA 1128 49.38 MGIDADSVVKGFGGGWGVVTKPCDSCKTGPAAVYCRPDSAFLCLSCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSTESVVKSSSVLNFLVPNETTAPVCDGAHHHEEVEVSSWLLSNSFFNSKLVDGPEIKPPSGDHLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLPTPVINQTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSDISYPMGQNVSTGADSGLPLSGSGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDAQYGVVPTF* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26089518 26090740 - Chy2G044590.1 Chy02g02192 221640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy02g02192 375 CDD Bbox1_BBX-like 22 65 - -
Chy02g02192 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 375 - -
Chy02g02192 375 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Chy02g02192 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 375 IPR045281 GO:0009909
Chy02g02192 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Chy02g02192 375 CDD Bbox1_BBX-like 66 108 - -
Chy02g02192 375 Pfam CCT motif 302 344 IPR010402 GO:0005515
Chy02g02192 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Chy02g02192 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
Chy02g02192 375 SMART bboxneu5 66 108 IPR000315 GO:0008270
Chy02g02192 375 SMART bboxneu5 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02192 Chy-Chr2:26089518 Chy03g01067 Chy-Chr3:14104800 3.04E-105 dispersed
Chy10g01148 Chy-Chr10:16403867 Chy02g02192 Chy-Chr2:26089518 1.93E-07 dispersed
Chy11g00733 Chy-Chr11:9809676 Chy02g02192 Chy-Chr2:26089518 2.56E-08 dispersed
Chy02g02191 Chy-Chr2:26080814 Chy02g02192 Chy-Chr2:26089518 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
17577 PF00643 zf-B_box 6.80E-07 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy02g02192 - - csv:101214816 739.569